View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4635-Insertion-7 (Length: 627)
Name: NF4635-Insertion-7
Description: NF4635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4635-Insertion-7 |
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Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 6 - 326
Target Start/End: Original strand, 43561679 - 43561999
Alignment:
| Q |
6 |
caaattccaccatggcagcagcttctgcagctgcaacttgaatgtcacgtggagacaacgttgttggtcttggaagcatgtgcgctatttcggggaagtt |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43561679 |
caaattccaccatggcagcagcttctgcagctgcaacttgaatgtcacgtggagacaacgttgttggtcttggaagcatgtgcgctatttcggggaagtt |
43561778 |
T |
|
| Q |
106 |
cagaattgctgaatgaccctttatactcaaagcagcaacatcatgcgctctagctgccatttcaggagtagcgtaagttccaagccagattcgtgatttt |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43561779 |
aagaattgctgaatgaccctttatactcaaagcagcaacatcatgcgctctagctgccatttcaggagtagcgtaagttccaagccagattcgtgatttt |
43561878 |
T |
|
| Q |
206 |
ttgcgaggttcgcggatttctgatacccattttccccagcttcgcattcgaacgccgtgataaaccgggtggctgttgcagtctctgtttttcttcacct |
305 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43561879 |
ttgcgaggttcgcggatttccgatacccattttccccagcttcgcattcgaacgccgtgataaaccgggtggctgttgcagtctctgtttttcttcacct |
43561978 |
T |
|
| Q |
306 |
tgctctgtttctttgtctctg |
326 |
Q |
| |
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||||||||||||||||||||| |
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| T |
43561979 |
tgctctgtttctttgtctctg |
43561999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 396 - 627
Target Start/End: Original strand, 43562069 - 43562302
Alignment:
| Q |
396 |
agaatgggaaagagattgagagataagagatggaaggtgttgaggagaaatagtgttggtgaaattgctttttatacgagaaaatattttgtcatatcaa |
495 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43562069 |
agaatgggaaagagattgagagataagagatggaaggtgttgaggagaaatagtgttggtgaaattgctttttatacgagaaaatattttgtcatatcaa |
43562168 |
T |
|
| Q |
496 |
taatgacgatacatctataccctttttcgtacacttgtcacac-caaaggcacatgtttaaagatatgg-taattcaattctatgtaaatttcaacgtaa |
593 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
43562169 |
taatgacgatacatctataccctttttcgtacacttgtcacacacaaagacacatggttaaaattatggttaattcaattctatgtaaatttcaacgtaa |
43562268 |
T |
|
| Q |
594 |
tctaaattaatcatctaaccgacttagttaacta |
627 |
Q |
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|||||||||||||||||||||||| ||||||||| |
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| T |
43562269 |
tctaaattaatcatctaaccgactgagttaacta |
43562302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 138 - 204
Target Start/End: Original strand, 36077744 - 36077810
Alignment:
| Q |
138 |
cagcaacatcatgcgctctagctgccatttcaggagtagcgtaagttccaagccagattcgtgattt |
204 |
Q |
| |
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|||| |||||||| ||| ||||||||||||| || |||| ||||||||| ||||| |||| |||||| |
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| T |
36077744 |
cagctacatcatgtgctatagctgccatttctggtgtagggtaagttcctagccatattcttgattt |
36077810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 7e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 134 - 249
Target Start/End: Complemental strand, 4268763 - 4268648
Alignment:
| Q |
134 |
aaagcagcaacatcatgcgctctagctgccatttcaggagtagcgtaagttccaagccagattcgtgattttttgcgaggttcgcggatttctgataccc |
233 |
Q |
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||||| || ||||| || ||||||||||||||||| || || | | | ||||| |||||||||| |||||||||||| |||||||||||||| ||||||| |
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| T |
4268763 |
aaagctgctacatcgtgtgctctagctgccatttctggtgttgagaatgttcctagccagattcttgattttttgcgtggttcgcggatttcagataccc |
4268664 |
T |
|
| Q |
234 |
attttccccagcttcg |
249 |
Q |
| |
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||||||||||| |||| |
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| T |
4268663 |
attttccccagtttcg |
4268648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 112 - 207
Target Start/End: Original strand, 505520 - 505615
Alignment:
| Q |
112 |
tgctgaatgaccctttatactcaaagcagcaacatcatgcgctctagctgccatttcaggagtagcgtaagttccaagccagattcgtgatttttt |
207 |
Q |
| |
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||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||| |||| ||| ||||||||||| |||| ||||||||| |
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| T |
505520 |
tgctgaatgaccctttatagctaaagcagctacatcatgtgctctagctgccatttcagctgtagggtatgttccaagccatattcttgatttttt |
505615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 113 - 243
Target Start/End: Original strand, 16357796 - 16357926
Alignment:
| Q |
113 |
gctgaatgaccctttatactcaaagcagcaacatcatgcgctctagctgccatttcaggagtagcgtaagttccaagccagattcgtgattttttgcgag |
212 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||| ||||||||||||||||||| |||| ||| ||||||||||| |||| ||| || || | | |
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| T |
16357796 |
gctgaatgaccctttatggctaaagcagctacatcatgagctctagctgccatttcagctgtagggtatgttccaagccatattcttgacttctttcttg |
16357895 |
T |
|
| Q |
213 |
gttcgcggatttctgatacccattttcccca |
243 |
Q |
| |
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| || || ||||| ||||||||||||||||| |
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| T |
16357896 |
gctcacgaatttcagatacccattttcccca |
16357926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 161 - 254
Target Start/End: Complemental strand, 33589286 - 33589193
Alignment:
| Q |
161 |
gccatttcaggagtagcgtaagttccaagccagattcgtgattttttgcgaggttcgcggatttctgatacccattttccccagcttcgcattc |
254 |
Q |
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|||||||||| ||||| || ||||||||||||||||| ||| || || ||||| |||||||| ||||||||||||||||| ||||||||| |
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| T |
33589286 |
gccatttcagccgtagcatatgttccaagccagattcgacttttctttcgtggttcacggatttcggatacccattttccccatgttcgcattc |
33589193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 158 - 254
Target Start/End: Complemental strand, 33602408 - 33602312
Alignment:
| Q |
158 |
gctgccatttcaggagtagcgtaagttccaagccagattcgtgattttttgcgaggttcgcggatttctgatacccattttccccagcttcgcattc |
254 |
Q |
| |
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||||||||||||| || ||| | ||||| ||||||||||| ||| || || ||||| |||||||| || |||||||||||||| ||||||||| |
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| T |
33602408 |
gctgccatttcagcggttgcgaatgttcctagccagattcggtttttctttcgtggttctcggatttcagaaacccattttccccatgttcgcattc |
33602312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 137 - 243
Target Start/End: Complemental strand, 71116 - 71010
Alignment:
| Q |
137 |
gcagcaacatcatgcgctctagctgccatttcaggagtagcgtaagttccaagccagattcgtgattttttgcgaggttcgcggatttctgatacccatt |
236 |
Q |
| |
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|||||| | |||||||||||||| |||||||||| ||| | | |||| || ||||| || || ||||| || || || ||||||||||| || ||||| | |
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| T |
71116 |
gcagcagcgtcatgcgctctagcagccatttcagcagtggggaaagtgcctagccaaatccgcgatttcttacgtggctcgcggatttcggacacccact |
71017 |
T |
|
| Q |
237 |
ttcccca |
243 |
Q |
| |
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||||||| |
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| T |
71016 |
ttcccca |
71010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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