View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4635-Insertion-8 (Length: 486)
Name: NF4635-Insertion-8
Description: NF4635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4635-Insertion-8 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 8 - 460
Target Start/End: Original strand, 36309834 - 36310283
Alignment:
| Q |
8 |
catgagacgctaactataagaggatcaaaaggaacataattagataaaatacattgtacatnnnnnnnnngataatatatcttcatcggnnnnnnnnnnn |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
36309834 |
catgagacgctaactataagaggatcaaaaggaacataattagataaaatacattgtacataaaaaaaa-gataatatatcttcatcgaaaaaaagaaa- |
36309931 |
T |
|
| Q |
108 |
tagaatataatattttgttaactaattgcgaggataattggtcatcagcacctattgagtaatgaatggttaaattggggaatgtttgttaaccaaagca |
207 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36309932 |
-agaatattatattttgttaactaattgcgaggataattggtcatcagcacctattgagtaatgaatggttaaattggggaatgtttgttaaccaaagca |
36310030 |
T |
|
| Q |
208 |
agcaagattgagacaatgacaaaaagcaaaccacaacggcaacgcattctcatctttctttnnnnnnntgataatcattgtgaagatcaaattgttgttt |
307 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
36310031 |
agcaagattgagacaatgacaaaatgcaaaccacaatggcaacgcattctcatctttctttaaaaaaatgataatcattgtgaagaacaaattgttgttt |
36310130 |
T |
|
| Q |
308 |
attccgtatgatctataccatgccataaatttaagaaattgatataatatgtaaccatttattttcatttcttaaattgaatatttatataccacaatta |
407 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
36310131 |
attccatatgatctataccatgccataaatttaagaaattgatataatatgtaaccatttattttcatttcttaaattgaatatttatataccacaagta |
36310230 |
T |
|
| Q |
408 |
caactctcaaaaaacctctattttagtgtggtctgaacaattaaaaaagcaag |
460 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
36310231 |
gaactctcaaaaaacctctattttagtgtggtctcaacaattaaaaaagcaag |
36310283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 108 - 419
Target Start/End: Original strand, 36324552 - 36324864
Alignment:
| Q |
108 |
tagaatataatattttgttaactaattgcgaggataattggtcatcagcacctattgagtaatgaatggttaaattggggaatgtttgttaaccaaagca |
207 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| | |
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|
| T |
36324552 |
tagaatataatattttgttaactaattgcaaggataattggttatcagcatctattgagtaatgaaaggttaaattggggaatgtttgttaaccaaagta |
36324651 |
T |
|
| Q |
208 |
agcaagattgagacaatgacaaaaagcaaaccacaacggcaacgcattctcat-ctttctttnnnnnnntgataatcattgtgaagatcaaattgttgtt |
306 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||| |||||||| ||| ||| |||||||||||| ||||| |||||||||||| |
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|
| T |
36324652 |
agcaagattgagacaatgacaaatagcaaaccacagtggcaacaaattctcatattttttttagaaaaatgataatcattgcgaagaacaaattgttgtt |
36324751 |
T |
|
| Q |
307 |
tattccgtatgatctataccatgccataaatttaagaaattgatataatatgtaaccatttattttcatttcttaaattgaatatttatataccacaatt |
406 |
Q |
| |
|
|||||| |||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||| | |
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|
| T |
36324752 |
tattccatatgatttataccatgccatatttttaagaaattgatataatatataaccatttatttttatttcttaaattgaatattaatataccacaagt |
36324851 |
T |
|
| Q |
407 |
acaactctcaaaa |
419 |
Q |
| |
|
| ||||||||||| |
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|
| T |
36324852 |
agaactctcaaaa |
36324864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 108 - 419
Target Start/End: Original strand, 36307117 - 36307428
Alignment:
| Q |
108 |
tagaatataatattttgttaactaattgcgaggataattggtcatcagcacctattgagtaatgaatggttaaattggggaatgtttgttaaccaaagca |
207 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||| || ||||| || |||||| |||||||| |||||||||||| ||||||||| | |
|
|
| T |
36307117 |
tagaagataatattttgttaactaattgcgaggataattggtcatcaacaactattaagcaatgaaaggttaaatcggggaatgtttggtaaccaaagta |
36307216 |
T |
|
| Q |
208 |
agcaagattga-gacaatgacaaaaagcaaaccacaacggcaacgcattctcatctttctttnnnnnnntgataatcattgtgaagatcaaattgttgtt |
306 |
Q |
| |
|
||||||||| || |||||||| |||||| | || |||||| ||||||| || ||| |||||||||||| ||||| |||| ||||||| |
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|
| T |
36307217 |
agcaagattcttgataatgacaactagcaaatcctaatggcaacaaattctcagtatt-tttagaaaaatgataatcattgcgaagaacaaactgttgtt |
36307315 |
T |
|
| Q |
307 |
tattccgtatgatctataccatgccataaatttaagaaattgatataatatgtaaccatttattttcatttcttaaattgaatatttatataccacaatt |
406 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
36307316 |
tattccatatgatctataccatgccatatttttaagaaattgatataatatgcaaccatttattttcatttcttaaattgaatattaatataccacaatt |
36307415 |
T |
|
| Q |
407 |
acaactctcaaaa |
419 |
Q |
| |
|
| ||||||||||| |
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|
| T |
36307416 |
agaactctcaaaa |
36307428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 108 - 419
Target Start/End: Original strand, 36346208 - 36346522
Alignment:
| Q |
108 |
tagaatataatattttgttaactaattgcgaggataattggtcatcagcacctattgagtaatgaatggttaaattggggaatgtttgttaaccaaagca |
207 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| ||||||||| || | ||||||||||||| |||||||||||||||||||||||||||| ||| |
|
|
| T |
36346208 |
tagattataatattttgttaactaattgcgaggataaatggtcatcaacaacaattgagtaatgaaaggttaaattggggaatgtttgttaaccacggca |
36346307 |
T |
|
| Q |
208 |
agcaaga-ttgagacaatgacaaaaagcaaaccacaacggcaacgcattct-catctttcttt-nnnnnnntgataatcattgtgaagatcaaattgttg |
304 |
Q |
| |
|
||||||| ||||||||||| ||| |||||||||||| |||||| ||| | ||| ||| ||| |||||||||||||||| | ||||| ||| |
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|
| T |
36346308 |
agcaagatttgagacaatggcaactagcaaaccacaatggcaacaaattttccatttttttttagaaaaaatgataatcattgtgaacaacaaatgattg |
36346407 |
T |
|
| Q |
305 |
tttattccgtatgatctataccatgccataaatttaagaaattgatataatatgtaaccatttattttcatttcttaaattgaatatttatataccacaa |
404 |
Q |
| |
|
|||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||| |||| |
|
|
| T |
36346408 |
tttattccatatgatctataccataccatatttttaagaaattgatataatatgtaatcatttattttcatttcttatattgaatattaatatatcacag |
36346507 |
T |
|
| Q |
405 |
ttacaactctcaaaa |
419 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
36346508 |
gtagaactctcaaaa |
36346522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 278 - 404
Target Start/End: Original strand, 36328336 - 36328462
Alignment:
| Q |
278 |
ataatcattgtgaagatcaaattgttgtttattccgtatgatctataccatgccataaatttaagaaattgatataatatgtaaccatttattttcattt |
377 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
36328336 |
ataatcattgtgaagaacaaattgttgtttattccatatgatctataccatgccatatttttaagaaattgatataatatgttaccacttattttcattt |
36328435 |
T |
|
| Q |
378 |
cttaaattgaatatttatataccacaa |
404 |
Q |
| |
|
||||||||||||||| ||||||||||| |
|
|
| T |
36328436 |
cttaaattgaatattaatataccacaa |
36328462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 108 - 216
Target Start/End: Original strand, 36328187 - 36328295
Alignment:
| Q |
108 |
tagaatataatattttgttaactaattgcgaggataattggtcatcagcacctattgagtaatgaatggttaaattggggaatgtttgttaaccaaagca |
207 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||| |||||||| || |||||||| ||||| |||||||||||||||||||||||||||| || | |
|
|
| T |
36328187 |
tagaatataatattttgctagctaattgcgaggataataggtcatcaacaactattgagacatgaaaggttaaattggggaatgtttgttaaccatagta |
36328286 |
T |
|
| Q |
208 |
agcaagatt |
216 |
Q |
| |
|
||||||||| |
|
|
| T |
36328287 |
agcaagatt |
36328295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 36338445 - 36338489
Alignment:
| Q |
108 |
tagaatataatattttgttaactaattgcgaggataattggtcat |
152 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
36338445 |
tagaatataatattttgttaagtaattgcgaggataattggtcat |
36338489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 36346106 - 36346165
Alignment:
| Q |
8 |
catgagacgctaactataagaggatcaaaaggaacataattagataaaatacattgtaca |
67 |
Q |
| |
|
|||||||| ||| |||||||||| ||||| |||||| |||||||||||||||||||||| |
|
|
| T |
36346106 |
catgagacaataaatataagaggaccaaaaagaacatgattagataaaatacattgtaca |
36346165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 36338338 - 36338397
Alignment:
| Q |
8 |
catgagacgctaactataagaggatcaaaaggaacataattagataaaatacattgtaca |
67 |
Q |
| |
|
|||||||| |||| |||||||||| ||||| |||||| |||||||| | ||||||||||| |
|
|
| T |
36338338 |
catgagacactaaatataagaggaccaaaaagaacattattagatagagtacattgtaca |
36338397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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