View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4635-Insertion-9 (Length: 384)
Name: NF4635-Insertion-9
Description: NF4635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4635-Insertion-9 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 8 - 384
Target Start/End: Original strand, 738900 - 739270
Alignment:
| Q |
8 |
cttagaaatactttaaattgtggccgtaacataacgattttagaggtcaaataaattgcaattacggtcagatataagccgcatttgcctgcattttacc |
107 |
Q |
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| T |
738900 |
cttagaaatagtttaaattgtggccgtaacataacgattttagaggtcaaataaattgcaattacggtcagatataagccgcatttgcctgcattttacc |
738999 |
T |
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| Q |
108 |
gcaatttaaaacagatatatttggagtgaggggaacttactgatagtgtcgccgatttggaagttcttagtagcagcccatttcttgtaatctatactac |
207 |
Q |
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| T |
739000 |
gcaatttaaaacagatat--ttggagtgaggggaacttaccgatagtgtcgccgatttggaagttcttagtagcagcccatttcttgtaatctatactac |
739097 |
T |
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| Q |
208 |
caatgattgtccagccagaagagtctccaaccttgtgaacagctgcatttgaaaccttgatagctaccatcataaccatcaagaaaactacagatctctc |
307 |
Q |
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| T |
739098 |
caatgattgtccagccagaagagtctccaaccttgtgaacagctgcatttgaaaccttgatagctaccatcataaccatcaagaaaactacagatctctc |
739197 |
T |
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| Q |
308 |
tacaaatcccatgannnnnnnnnnnnnagcaaggaaattagcaaaacttcctcttgaggtgtgtactaatgagactc |
384 |
Q |
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| T |
739198 |
tacaaatcccatga----ctctctctcagcaaggaaattagcaaaacttcctcttgaggtgtgtactaatgagactc |
739270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 142 - 280
Target Start/End: Complemental strand, 47218922 - 47218784
Alignment:
| Q |
142 |
acttactgatagtgtcgccgatttggaagttcttagtagcagcccatttcttgtaatctatactaccaatgattgtccagccagaagagtctccaacctt |
241 |
Q |
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| T |
47218922 |
acttactaatagtgtcaccaagttggaagttcttggtagcagcccattttttgtagtcaatgttaccaagtgtagtccagccagcagaatcaccaacctt |
47218823 |
T |
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| Q |
242 |
gtgaacagctgcatttgaaaccttgatagctaccatcat |
280 |
Q |
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| T |
47218822 |
gtatacagctgcatatgaaatctgcatagctaccatcat |
47218784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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