View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4635_low_1 (Length: 525)
Name: NF4635_low_1
Description: NF4635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4635_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 337; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 14020393 - 14020017
Alignment:
| Q |
1 |
atacgagaatgataagaataaggaaaattacactcacctcccataagttctattaaaaatacggacttcaggtaatgaaaatgtgacttctagtccattc |
100 |
Q |
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| T |
14020393 |
atacgagaatgataagaataaggaaaattacactcacctcccataagttctattaaaaatacggacttcaggtaatgaaaatgtgacttctagttcattc |
14020294 |
T |
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| Q |
101 |
cttcgttgtctgtcgtaactatcaaaggttcatctaaaactcaagtgcagacttcaggtaatgaatataccacaacaacatgagaatcgaaaaagacagc |
200 |
Q |
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| T |
14020293 |
cttcgttgtctgtcgttactatcaaaggttcatctaaaactcaagtgcatacttcaggtaatgaatataccacaacaacatgagaatcgacaaagacagc |
14020194 |
T |
|
| Q |
201 |
caagagacccacttctaagccagcaaggaggtcaataaaggcattgttcgtgaaccctggaattttcaaaatcgtctccttaagtatagagaatcgacac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
14020193 |
caagagacccacttctaagccagcaaggaggtcaataaaggcattgttcgtgaaccatggaattttcaaaatcgtctccataagtgtagagaatcgacaa |
14020094 |
T |
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| Q |
301 |
aaaaaatggtttgtcttttgccaattgaagaatctcgttagaagttaacagaaaattttcttaagaaaacaaataga |
377 |
Q |
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| T |
14020093 |
aaaaaatggtttgtcttttgccaattgaagaatctcgttaaaagttaacaaaaaattttcttaagaaaacaaataga |
14020017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 13475728 - 13475903
Alignment:
| Q |
1 |
atacgagaatgataagaataaggaaaattacactcacctcccataagttctattaaaaatacg--gacttcaggtaatgaaaatgtgacttctagtccat |
98 |
Q |
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| T |
13475728 |
atacgagaatgataggaataagtaaaattacactcacctcccgtatgttctattaaaattacacagactttaggtaatgaaaatgcgacttctagttcgt |
13475827 |
T |
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| Q |
99 |
tccttcgttgtctgtcgtaactatcaaaggttcatctaaaactcaagtgcagacttcaggtaatgaatataccaca |
174 |
Q |
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| T |
13475828 |
ttcttcgttgtctatcattactatcaaaggttcatctaaaactcaagtgcagacttcaggtaatgaatctaccaca |
13475903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 213 - 361
Target Start/End: Original strand, 13475918 - 13476066
Alignment:
| Q |
213 |
ttctaagccagcaaggaggtcaataaaggcattgttcgtgaaccctggaattttcaaaatcgtctccttaagtatagagaatcgacacaaaaaatggttt |
312 |
Q |
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|||||||||||| ||||| | | |||||| ||||||||||||| ||||||||||||||||||||| | || ||||| |||||| ||| |||| | ||||| |
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| T |
13475918 |
ttctaagccagccaggagatgagtaaaggaattgttcgtgaactctggaattttcaaaatcgtctgcataggtataaagaatcaacaaaaaagaaggttt |
13476017 |
T |
|
| Q |
313 |
gtcttttgccaattgaagaatctcgttagaagttaacagaaaattttct |
361 |
Q |
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||| |||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
13476018 |
gtcgtttgccaattgaagaatcccgttaaaagttaacagaaaattttct |
13476066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 14108586 - 14108462
Alignment:
| Q |
1 |
atacgagaatgataagaataaggaaaattacactcacctcccataagttctattaaaa--atacggacttcaggtaatgaaaatgtgacttctagtccat |
98 |
Q |
| |
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|||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||| | | |
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| T |
14108586 |
atacgaaaatgataggaataatgaaaattacactcacctcccataagttctattaaaaggatacagacttcaggtaatgaaaatgcgacttctagttcgt |
14108487 |
T |
|
| Q |
99 |
tccttcgttgtctgtcgtaactatc |
123 |
Q |
| |
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| |||||||||||||| | |||||| |
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| T |
14108486 |
tacttcgttgtctgtcattactatc |
14108462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 163 - 241
Target Start/End: Complemental strand, 14108422 - 14108344
Alignment:
| Q |
163 |
gaatataccacaacaacatgagaatcgaaaaagacagccaagagacccacttctaagccagcaaggaggtcaataaagg |
241 |
Q |
| |
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|||| ||||||| ||||||||||||||| |||| ||| || |||||||||||||||||| ||||||||| | |||||| |
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| T |
14108422 |
gaatctaccacatcaacatgagaatcgataaaggcagtaaaaagacccacttctaagccatcaaggaggtgagtaaagg |
14108344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 469 - 508
Target Start/End: Complemental strand, 14044951 - 14044912
Alignment:
| Q |
469 |
tgtcatatatgttctgattttctttttatccgtacccatt |
508 |
Q |
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| T |
14044951 |
tgtcatatatgttctgattttctttttatccgtagccatt |
14044912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 168 - 287
Target Start/End: Complemental strand, 24786822 - 24786703
Alignment:
| Q |
168 |
taccacaacaacatgagaatcgaaaaagacagccaagagacccacttctaagccagcaaggaggtcaataaaggcattgttcgtgaaccctggaattttc |
267 |
Q |
| |
|
||||||| ||||| ||||| ||| ||||||||| || ||||| || ||| |||||| ||||||| | |||||||||||| | |||| |||||||||||| |
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| T |
24786822 |
taccacatcaacaggagaaccgataaagacagcaaaaagacctgctcctaggccagctaggaggtgagtaaaggcattgtccatgaatcctggaattttc |
24786723 |
T |
|
| Q |
268 |
aaaatcgtctccttaagtat |
287 |
Q |
| |
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|||||||||| | ||||||| |
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| T |
24786722 |
aaaatcgtctgcataagtat |
24786703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 308 - 361
Target Start/End: Complemental strand, 279141 - 279088
Alignment:
| Q |
308 |
ggtttgtcttttgccaattgaagaatctcgttagaagttaacagaaaattttct |
361 |
Q |
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|||||||||||| |||||| ||||||| |||| |||||||||||||||||||| |
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| T |
279141 |
ggtttgtcttttcccaattcaagaatcctgttaaaagttaacagaaaattttct |
279088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 308 - 361
Target Start/End: Original strand, 636711 - 636764
Alignment:
| Q |
308 |
ggtttgtcttttgccaattgaagaatctcgttagaagttaacagaaaattttct |
361 |
Q |
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|||||||||||| |||||| ||||||| |||| |||||||||||||||||||| |
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| T |
636711 |
ggtttgtcttttcccaattcaagaatcctgttaaaagttaacagaaaattttct |
636764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 308 - 361
Target Start/End: Original strand, 822514 - 822567
Alignment:
| Q |
308 |
ggtttgtcttttgccaattgaagaatctcgttagaagttaacagaaaattttct |
361 |
Q |
| |
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|||||||||||| |||||| ||||||| |||| |||||||||||||||||||| |
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| T |
822514 |
ggtttgtcttttcccaattcaagaatcctgttaaaagttaacagaaaattttct |
822567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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