View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4635_low_2 (Length: 351)
Name: NF4635_low_2
Description: NF4635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4635_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 55372908 - 55373249
Alignment:
| Q |
1 |
actcttccaatttccctttgattccctcttggtaatctgtcacacgtacaaaaataaataaccacaccaaagtcaatatcttaaatgattgaattatgaa |
100 |
Q |
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| T |
55372908 |
actcttccaatttccctttgattccctcttggtaatctgtcacacgtacaaaaataaataaccacaccaaagtcaatatcttaaatgattgaattatgaa |
55373007 |
T |
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| Q |
101 |
attaattaaactatatattattcttaatactatgtttgtttttacctgttttttagtatggtcatttggtgcattataaaagttgccttcacttaaaatg |
200 |
Q |
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| T |
55373008 |
attaattaaactatatattattcttaatactatgtttgtttttacctgttttttagtatggtcatttggtgcattataaaagttgccttcacttaaaatg |
55373107 |
T |
|
| Q |
201 |
gttgggttagcacttcctcctatagcatacatttgccactgatcatatttgttgttcaccacatgagcataaccaaatcttaccctgcacattcatcaac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55373108 |
gttgggttagcacttcctcctatagcatacatttgccactgatcatatttgttgttcaccacatgagcataaccaaatcttaccctgcacattcatcaac |
55373207 |
T |
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| Q |
301 |
aactcaatattttaatttatatatcatcaaagtcagtataat |
342 |
Q |
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| T |
55373208 |
aactcaatattttaatttatatatcatcaaagtcaatataat |
55373249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 85
Target Start/End: Original strand, 35868632 - 35868704
Alignment:
| Q |
10 |
atttccctttga-ttccctcttggtaatctgtcacacgtacaaaaataaataaccacaccaaagtcaatatcttaaa |
85 |
Q |
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| T |
35868632 |
atttccctttaacttccctcttgataatctgtcacac----aagaataaataaccagacccaagtcaatatcttaaa |
35868704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 289
Target Start/End: Original strand, 8526154 - 8526248
Alignment:
| Q |
195 |
aaaatggttgggttagcacttcctcctatagcatacatttgccactgatcatatttgttgttcaccacatgagcataaccaaatcttaccctgca |
289 |
Q |
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|||||||| |||| |||||| || || || |||||||| ||||| ||| ||| |||||| || ||||| ||||||||||||||||||||||| |
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| T |
8526154 |
aaaatggtagggtcagcactaccaccaatggcatacatgatccactcatcgtatcggttgtttacaacatgggcataaccaaatcttaccctgca |
8526248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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