View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4635_low_3 (Length: 306)
Name: NF4635_low_3
Description: NF4635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4635_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 148; Significance: 4e-78; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 18 - 181
Target Start/End: Complemental strand, 16878399 - 16878236
Alignment:
| Q |
18 |
taaaaaagtgttagcattgaaatacttacaaatctccatctaagtataaagcaaaaccaccacctccaccaagtgcaagtgagtcattagaacacaaata |
117 |
Q |
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| T |
16878399 |
taaaaaagtgttagcattgaaatacttacaaatctccatctaagtataaagcaaaaccaccacctccaccaaatgcaaatgagtcattagaacacaaata |
16878300 |
T |
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| Q |
118 |
atagtaacgattgacacctagaatagaattaaccatataaaattgcgacatcaattatcaatca |
181 |
Q |
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| T |
16878299 |
atagtaccgattaacacctagaatagaattaaccatataaaattgcgacatcaattatcaatca |
16878236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 177 - 294
Target Start/End: Complemental strand, 16878132 - 16878006
Alignment:
| Q |
177 |
aatcattttcatttgtctaataataataatactaacaacaacaac---------cttcataagttaccaatcacttgtttaatttcttccttttgattat |
267 |
Q |
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| T |
16878132 |
aatcattttcatttgtctaagaataataatactaacaacaacaacaacaacaaccttcataagttaccaatcacttgtttaatttcttccttttgattat |
16878033 |
T |
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| Q |
268 |
aaatcgacaatctgaattatgaagtat |
294 |
Q |
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| T |
16878032 |
aaatcgacaatctgaattatgaagtat |
16878006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 105
Target Start/End: Complemental strand, 32548285 - 32548222
Alignment:
| Q |
42 |
cttacaaatctccatctaagtataaagcaaaaccaccacctccaccaagtgcaagtgagtcatt |
105 |
Q |
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| T |
32548285 |
cttacaaatctccatctaagcataaagcaaaattaccgccaccaccaagtccaagtaagtcatt |
32548222 |
T |
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