View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4636-Insertion-1 (Length: 1125)
Name: NF4636-Insertion-1
Description: NF4636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4636-Insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 922; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 922; E-Value: 0
Query Start/End: Original strand, 6 - 1081
Target Start/End: Complemental strand, 55885390 - 55884323
Alignment:
| Q |
6 |
cagagccatctccgggttttcatagctgcgnnnnnnncaataattagtcaacaacatagtctaatcaatcgcagaaaaagcaaaatttcacaacaagcat |
105 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||| |
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| T |
55885390 |
cagagccatctccgggttttcatagctgcgaaaaaaacaataattagtcaacaacatattctaatcaatcgcaaaaaaaacaaaatttcacaacaagcat |
55885291 |
T |
|
| Q |
106 |
cccaataagaaacagaagaagtcatatgcacatagtaatatgaacgcgacatgactaattcccacaaaaaatacataaaattcagccaatatttcaaaat |
205 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55885290 |
cccaataagaaacagaagaagtcatatgcacatagtaatatgaacgcgacatgactaattcccacaaaaaatacataaaattcagccaatatttcaaaat |
55885191 |
T |
|
| Q |
206 |
cggatttgatttcaatccatttggacaagccggtatattaaacaacaaactataagtcaaacatcaagagaccaaaatgttcatccaacaattttattct |
305 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
55885190 |
cggatttgatttcaatccatttggacaagccagtatattaaacaacaaactataagtcaaacatcaagagactaaaatgttcatccaacaattttattct |
55885091 |
T |
|
| Q |
306 |
attttttaacaaataaatgttcatccagcattcttttaacaaataaatgtccgtccaacgattaatcacctagataccaagatatccataagatccaaat |
405 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
55885090 |
attttttaacaaataaatgttcatccagcattcttttaacaaataaatgttcgtccaatgattaatcacctagataccaaaatatccataagatccaaat |
55884991 |
T |
|
| Q |
406 |
ttttctccaaataatcagatgcaatcagcttggattgaacttgttgcctctgtaaatttgcaacaacttgagtagcatctttcctagcctgcacaatccc |
505 |
Q |
| |
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| T |
55884990 |
ttttctccaaataatcagatgcaatcagcttggattgaacttgttgcctctgtaaatttgcaacaacttgagtagcatctttcctagcctgcacaatccc |
55884891 |
T |
|
| Q |
506 |
aaaatcacagatatgattaaaacaaatgctaatatcataactcataatctgtgttaacaaaattgataactacctccaaattcaattttggaagacactg |
605 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
55884890 |
aaaatcacagatatgattaaaacaaatgctaatatcataactcataatccgtgttaacaaaattgataactacctccaaattcaattttggaagacagtg |
55884791 |
T |
|
| Q |
606 |
aacaagaagtctcaaagtgttttcgttgaagaactcttgagtcaactgcgaacaagcttcaggaactggttcagcttcactatttccatacagaatcgtt |
705 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55884790 |
aacaagaagtctcaaagtgttttcgttgaagaattcttgagtcaactgcgaacaagcttcaggaactggttcagcttcactatttccatacagaatcgtt |
55884691 |
T |
|
| Q |
706 |
ttcatctctctcaaattcttaaacaactcgatcatctagtaatatagcatagcagaagaatcaaataaaacaaaatcagaatcatcaacaatgaagaaat |
805 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
55884690 |
ttcatctctctcaaattcttaaacaactcgatcatctagta-------atagcagaagaatgaaataaaacaaaatcagaatcatcaacaatgaagaaat |
55884598 |
T |
|
| Q |
806 |
tgaaattaaagagagagattgaaattgaaccttctcattatcgcgtttgttatcagaagaattagaannnnnnngaaggagacggagaagatctctagta |
905 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
55884597 |
tgaaattaaagagagagattgaaattgaaccttctcattatcgcgtttgttatcagaagaattagaa---ttttgaaggagacggagaagatctctagta |
55884501 |
T |
|
| Q |
906 |
ttacgaacaatgtcggaaggagtacggggcttaggcttgaagaggctcttagattcagtcgggaggtggtggttcagagtaaaccaccacctctgacgaa |
1005 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
55884500 |
ttacgaacaatgtcggaaggagtacggggcttaggcttgaagaggctcttagattcggtc-ggaggtggtggttcagagtaaaccaccacctctgacgaa |
55884402 |
T |
|
| Q |
1006 |
gagcctcttcg-agccccttgggtttagaaacgcacacacctattttta-aga-tttgatgatacttcatttaaatgga |
1081 |
Q |
| |
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| T |
55884401 |
gagcctcttcgaagccccttgggtttagaaacgcacacacctatttttacagattttgatgatacttcatttaaatgga |
55884323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 896 - 1054
Target Start/End: Complemental strand, 9616523 - 9616365
Alignment:
| Q |
896 |
atctctagtattacgaacaatgtcggaaggagtacggggcttaggcttgaagaggctcttagattcagtcgggaggtggtggttcagagtaaaccaccac |
995 |
Q |
| |
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||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||| |||||||| |||||||||| ||||| ||||| ||||| |
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| T |
9616523 |
atctctagtattacgaacaatgtcgaaaggagtacgcggcttaggcttgaggaggctcttatattcagtc-agaggtggtggatcagaataaactaccac |
9616425 |
T |
|
| Q |
996 |
ctctgacgaagagcctcttcg-agccccttgggtttagaaacgcacacacctatttttaa |
1054 |
Q |
| |
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||| ||||||||||| ||| | |||||||||||||||||||||||||||||||||||| |
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| T |
9616424 |
ttctaacgaagagcctactcgaaaccccttgggtttagaaacgcacacacctatttttaa |
9616365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 387 - 475
Target Start/End: Complemental strand, 9616825 - 9616737
Alignment:
| Q |
387 |
atatccataagatccaaatttttctccaaataatcagatgcaatcagcttggattgaacttgttgcctctgtaaatttgcaacaacttg |
475 |
Q |
| |
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|||||||||||||||| ||| |||||||| |||||||||| |||||||||||||||||| |||||||| ||||||||||| |||||||| |
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| T |
9616825 |
atatccataagatccatattcttctccaagtaatcagatgtaatcagcttggattgaacctgttgcctttgtaaatttgcgacaacttg |
9616737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 663 - 742
Target Start/End: Complemental strand, 9616657 - 9616578
Alignment:
| Q |
663 |
ttcaggaactggttcagcttcactatttccatacagaatcgttttcatctctctcaaattcttaaacaactcgatcatct |
742 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
9616657 |
ttcaggaactggttcaacatcactatttccatacaaaatcgttttaatctctctcaaattcttagacaactcgatcatct |
9616578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 882 - 954
Target Start/End: Complemental strand, 9616271 - 9616199
Alignment:
| Q |
882 |
aggagacggagaagatctctagtattacgaacaatgtcggaaggagtacggggcttaggcttgaagaggctct |
954 |
Q |
| |
|
|||||||| | |||||||||| |||||| |||||||||| ||||||| || |||||||||||||||||||||| |
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|
| T |
9616271 |
aggagacgaaaaagatctctaatattacaaacaatgtcgtaaggagtgcgaggcttaggcttgaagaggctct |
9616199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 698 - 740
Target Start/End: Complemental strand, 9616357 - 9616315
Alignment:
| Q |
698 |
gaatcgttttcatctctctcaaattcttaaacaactcgatcat |
740 |
Q |
| |
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| T |
9616357 |
gaatcgttttcatctctctcaaattcttaaacaactcgatcat |
9616315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 387 - 498
Target Start/End: Complemental strand, 9395960 - 9395849
Alignment:
| Q |
387 |
atatccataagatccaaatttttctccaaataatcagatgcaatcagcttggattgaacttgttgcctctgtaaatttgcaacaacttgagtagcatctt |
486 |
Q |
| |
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|||||||||||||||| ||| ||||||| ||||||||||| |||| ||| || ||||| ||||||| |||||||| |||||||||||||| ||||||| |
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| T |
9395960 |
atatccataagatccatattattctccaggtaatcagatgcgatcaacttagactgaaccggttgcctttgtaaattcgcaacaacttgagtggcatctt |
9395861 |
T |
|
| Q |
487 |
tcctagcctgca |
498 |
Q |
| |
|
|||| ||||||| |
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|
| T |
9395860 |
tcctggcctgca |
9395849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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