View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4636-Insertion-10 (Length: 293)
Name: NF4636-Insertion-10
Description: NF4636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4636-Insertion-10 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 17 - 260
Target Start/End: Complemental strand, 42118409 - 42118166
Alignment:
| Q |
17 |
ccttaaatactttgtgaattgcttgttacgcggatccataaagtggtgaatatgatcaatctgaactggtatttaatccaaattaaagtctatcaaagta |
116 |
Q |
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| T |
42118409 |
ccttaaatactttgtgaattgtttgttacgcggatccataaagtggtgaatatgatcaatctgaactggtatttaatccaaattaaagtctatcaaagta |
42118310 |
T |
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| Q |
117 |
acacaaaattgaattcatttctcttctctaaccgttttcgtcatcaccatgtcttcaccgcaacaaaactctgtccttccgtcctcttcccccgcaaatg |
216 |
Q |
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| T |
42118309 |
acacaaaattgaattcatttctcttctctaaccgttttcgtcatcaccatgtcttcaccgcaacaaaactctgtccttccgtcctcttcctccgcaaatg |
42118210 |
T |
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| Q |
217 |
catcccatctggtcaccgctgctccagtgacgaaagggttagtg |
260 |
Q |
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| T |
42118209 |
catcccatccggtcaccgctgctccagtgacgaaagggttagtg |
42118166 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 39612063 - 39612018
Alignment:
| Q |
33 |
aattgcttgttacgcggatccataaagtggtgaatatgatcaatctga |
80 |
Q |
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| T |
39612063 |
aattgcttgttacgcgtatccataa--tggtgtatatgatcaatctga |
39612018 |
T |
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