View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4636-Insertion-3 (Length: 1028)
Name: NF4636-Insertion-3
Description: NF4636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4636-Insertion-3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 726; Significance: 0; HSPs: 20)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 726; E-Value: 0
Query Start/End: Original strand, 140 - 1026
Target Start/End: Original strand, 2435045 - 2435954
Alignment:
| Q |
140 |
tacaggtatgcctggaatgactgcttatgctggtttctttgaattaggcagtcctaagaaaggagagaatgtttatgtttcagctgcatccggtgctgtt |
239 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2435045 |
tacaggtatgccgggaatgactgcatatgctggtttctttgaattaggcagtcctaagaaaggagagaatgtttatgtttcagctgcatccggtgctgtt |
2435144 |
T |
|
| Q |
240 |
ggtcaacttgtaggtcaatttgcaaaactgcatggttgttatgttgttggaagtgctggaacaaaagaaaaggtatatgcatacttttgttgttatatgt |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2435145 |
ggtcaacttgtaggtcaatttgcaaaactgcatggttgttatgttgttggaagtgctggaacaaaagaaaaggtatatgcatacttttgttgttatatgt |
2435244 |
T |
|
| Q |
340 |
gcttgcaaaaataatgaatcatcaacatcccctnnnnnnn-cctatgattatttattccactgtttaaagtactattactttgaatgaatctaattgcac |
438 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| | | ||||||||||| |
|
|
| T |
2435245 |
gcttgcaaaaataatgaatcatcaacatcccctaaaaaaaacctatgattatttattccactgtttaaagtactattattttgactaagtctaattgcac |
2435344 |
T |
|
| Q |
439 |
taaccacaatccatatctttgttcacttggtgagatttagttaatttgattatactacaaaaatactattttcaatt--------------------aca |
518 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
|
|
| T |
2435345 |
taacaacaatccatatctttgttcacttggtgagatttagttaatttgattatactacaaaaatactattttcaattttggaagtttttggataattata |
2435444 |
T |
|
| Q |
519 |
ttaaatgaactgaattgttgtggcacactaggtagatctgttgaagaataaatttggatatgatgaagcctttaactacaaagaagaaccagacctcaat |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2435445 |
ttaaatgaactgaattgttgtggcacactaggtagatctgttgaagaataaatttggatatgatgaagcctttaactacaaagaagaaccagacctcaat |
2435544 |
T |
|
| Q |
619 |
gcaactttaaaaaggtttgtttttaacatttttatggcagattttaatcaatttgtttattgacatcaaaaagtatagttacctagttagcaacacttca |
718 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2435545 |
gcaactttaaaaaggtctgtttttaacatttttatggcagattttaatcaatttgtttattgacatcaaaaagtatagttacctagttagcaacacttca |
2435644 |
T |
|
| Q |
719 |
aattgaaggcgagtcagagaagcgttgatgtctgacaccaacacaacattgtcactcgtgattgtatacaatcacttctatttttctaaattagtactcg |
818 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2435645 |
aattgaaggcgagtcagagaagcgttgatgtctgacaccaacacaacattgtcactcgtgattgtatacaatcacttctatttttctaaattagtactcg |
2435744 |
T |
|
| Q |
819 |
tatgtatgtatccgtatcgtgtcagtagtcagttagaatttctttggtaatatgagacactaataactatgggatatcaatttatgtatattaggtactt |
918 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2435745 |
tatgtatgtatccgtatcgtgtcagtagtcagttagaatttc-ttggtaatatgagacactaataactatgggatatcaatttatgtatattaggtactt |
2435843 |
T |
|
| Q |
919 |
tccaggaaggcattgacatttactttgagaatgttggtggg-aaacacttgatgctgtacttttg-atatgagagtccatgggcgcata-ctgtaggt-g |
1014 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||| ||||| || | |
|
|
| T |
2435844 |
tcca-gaaggcattgacatttactttgagaatgttggtgggaaaacacttgatgctgtacttttgaatatgagagtccatggccgcatacctgtaagtgg |
2435942 |
T |
|
| Q |
1015 |
aatgatctcaca |
1026 |
Q |
| |
|
|||||||||||| |
|
|
| T |
2435943 |
aatgatctcaca |
2435954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 8 - 315
Target Start/End: Original strand, 1458840 - 1459146
Alignment:
| Q |
8 |
atgtcccactttcctactatactggaattctcggtatgtattcaacaatttcaatttgtatcaatgttagtcgcatagttttctgccatttcattgtgac |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1458840 |
atgtcccactttcctactatactggaattctcggtatgtattcaacaatttcaatttgtatcaatgttagtcgcgtagttttctgccatttcattgtgac |
1458939 |
T |
|
| Q |
108 |
tcgtgacatatatgttgtgnnnnnnnnnnnactacaggtatgcctggaatgactgcttatgctggtttctttgaattaggcagtcctaagaaaggagaga |
207 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
1458940 |
tcgtgacatatatgttgtg-tttttgtttgactacaggtatgcctggaatgactgcttatgctggtttctttgaagtaggctctcctaagaaaggagaga |
1459038 |
T |
|
| Q |
208 |
atgtttatgtttcagctgcatccggtgctgttggtcaacttgtaggtcaatttgcaaaactgcatggttgttatgttgttggaagtgctggaacaaaaga |
307 |
Q |
| |
|
|||||| |||||||||||| || ||||| |||||||||||||| || ||||| || ||| |||||||||| ||||| |||||||||||||||| ||||| |
|
|
| T |
1459039 |
atgtttttgtttcagctgcctctggtgcagttggtcaacttgttggccaattcgctaaattgcatggttgctatgtcgttggaagtgctggaagtaaaga |
1459138 |
T |
|
| Q |
308 |
aaaggtat |
315 |
Q |
| |
|
||||||| |
|
|
| T |
1459139 |
gaaggtat |
1459146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 8 - 315
Target Start/End: Original strand, 2428547 - 2428853
Alignment:
| Q |
8 |
atgtcccactttcctactatactggaattctcggtatgtattcaacaatttcaatttgtatcaatgttagtcgcatagttttctgccatttcattgtgac |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2428547 |
atgtcccactttcctactatactggaattctcggtatgtattcaacaatttcaatttgtatcaatgttagtcgcgtagttttctgccatttcattgtgac |
2428646 |
T |
|
| Q |
108 |
tcgtgacatatatgttgtgnnnnnnnnnnnactacaggtatgcctggaatgactgcttatgctggtttctttgaattaggcagtcctaagaaaggagaga |
207 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
2428647 |
tcgtgacatatatgttgtg-tttttgtttgactacaggtatgcctggaatgactgcttatgctggtttctttgaagtaggctctcctaagaaaggagaga |
2428745 |
T |
|
| Q |
208 |
atgtttatgtttcagctgcatccggtgctgttggtcaacttgtaggtcaatttgcaaaactgcatggttgttatgttgttggaagtgctggaacaaaaga |
307 |
Q |
| |
|
|||||| |||||||||||| || ||||| |||||||||||||| || ||||| || ||| |||||||||| ||||| |||||||||||||||| ||||| |
|
|
| T |
2428746 |
atgtttttgtttcagctgcctctggtgcagttggtcaacttgttggccaattcgctaaattgcatggttgctatgtcgttggaagtgctggaagtaaaga |
2428845 |
T |
|
| Q |
308 |
aaaggtat |
315 |
Q |
| |
|
||||||| |
|
|
| T |
2428846 |
gaaggtat |
2428853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 140 - 368
Target Start/End: Original strand, 2431655 - 2431887
Alignment:
| Q |
140 |
tacaggtatgcctggaatgactgcttatgctggtttctttgaattaggcagtcctaagaaaggagagaatgtttatgtttcagctgcatccggtgctgtt |
239 |
Q |
| |
|
||||||||||| ||| ||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||| |
|
|
| T |
2431655 |
tacaggtatgctgggattgactgcatatgttggtttctttgaattaggcagtcctaagaaaggagaaaatgtttatgtttcagcggcatccagtgctgtt |
2431754 |
T |
|
| Q |
240 |
ggtcaacttgtaggtcaatttgcaaaactgcatggttgttatgttgttggaagtgctggaacaaaagaaaaggtatatgca----tacttttgttgttat |
335 |
Q |
| |
|
||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||| |
|
|
| T |
2431755 |
ggtcaacttgttggccaatttgcaaaattgcatggttgttatgttgttggaagtgctggaactaaagaaaaggtatttgcattcttacttttgttgttat |
2431854 |
T |
|
| Q |
336 |
atgtgcttgcaaaaataatgaatcatcaacatc |
368 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||| |
|
|
| T |
2431855 |
atgtgcctgcaaaaatgatgaatcatcaacatc |
2431887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 542 - 1006
Target Start/End: Original strand, 2429115 - 2429589
Alignment:
| Q |
542 |
cacactaggtagatctgttgaagaataaatttggatatgatgaagcctttaactacaaagaagaaccagacctcaatgcaactttaaaaaggtttgtttt |
641 |
Q |
| |
|
||||| |||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||| |
|
|
| T |
2429115 |
cacaccaggtggatttgttgaaaaataaatttggatatgatgaagcctttaactacaaagaagaaccagacctcaatgcagctttgaaaaggtctgtttt |
2429214 |
T |
|
| Q |
642 |
taacatttttatggcagatttt--aatcaatttgtttattgacatcaaaaagtatagttacctagttagcaacacttcaaattgaaggcgagtcagagaa |
739 |
Q |
| |
|
|||||||||||||| ||||||| | | |||||||||||||||| ||||||||||||||||||| | ||||||| | ||| |||||| ||| || | |
|
|
| T |
2429215 |
taacatttttatggtagatttttaatttaatttgtttattgaca-aaaaaagtatagttacctag-catcaacactatatattcaaggcgtgtccgacac |
2429312 |
T |
|
| Q |
740 |
gcgttgatgtctgacaccaacacaacattgtcactcgtgattgtatacaatcacttctatttttctaaattagtactcgtatgtatgtatc-------cg |
832 |
Q |
| |
|
| ||| || ||||||||||||| |||| ||| || ||||||| ||||| ||||||||||||||| |||||| || |||| ||||| |||| | |
|
|
| T |
2429313 |
gtgttaatatctgacaccaacataacagcgtctcttgtgattgcatacactcacttctatttttccaaattattattcgtgtgtatttatcagtgccagg |
2429412 |
T |
|
| Q |
833 |
tatcgtgtcagt-agtcagttaga-atttctttggtaatatgag--acactaataactatgggatatcaatttatgtatattaggtactttccaggaagg |
928 |
Q |
| |
|
|||||||| ||| ||| |||| | || |||||| ||||| ||||||||||||| |||||||||||||||| | ||| ||||||||| ||||| |
|
|
| T |
2429413 |
tatcgtgtgagtgcttca--tagatagttacctggtaaaatgagacacactaataactagtagatatcaatttatgtaaactagatactttcca-gaagg |
2429509 |
T |
|
| Q |
929 |
cattgacatttactttgagaatgttggtgggaa-acacttgatgctgtacttttg-atatgagagtccatgggcgcatac |
1006 |
Q |
| |
|
|||||||||||||||||||||||| || || || ||||||||||||||||| ||| |||||| | |||||||||| |||| |
|
|
| T |
2429510 |
cattgacatttactttgagaatgtggggggaaagacacttgatgctgtactcttgaatatgaaactccatgggcggatac |
2429589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 542 - 801
Target Start/End: Original strand, 1459408 - 1459668
Alignment:
| Q |
542 |
cacactaggtagatctgttgaagaataaatttggatatgatgaagcctttaactacaaagaagaaccagacctcaatgcaactttaaaaaggtttgtttt |
641 |
Q |
| |
|
||||| |||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||| |
|
|
| T |
1459408 |
cacaccaggtggatttgttgaaaaataaatttggatatgatgaagcctttaactacaaagaagaaccagacctcaatgcagctttgaaaaggtctgtttt |
1459507 |
T |
|
| Q |
642 |
taacatttttatggcagatttt--aatcaatttgtttattgacatcaaaaagtatagttacctagttagcaacacttcaaattgaaggcgagtcagagaa |
739 |
Q |
| |
|
|||||||||||||| ||||||| | | |||||||||||||||| |||||||||| |||||||| | ||||||| | ||| |||||| ||| || | |
|
|
| T |
1459508 |
taacatttttatggtagatttttaatttaatttgtttattgacaaaaaaaagtatacttacctag-catcaacactatatattcaaggcgtgtccgacac |
1459606 |
T |
|
| Q |
740 |
gcgttgatgtctgacaccaacacaacattgtcactcgtgattgtatacaatcacttctattt |
801 |
Q |
| |
|
| ||| || ||||||||||||| |||| ||| || ||||||| ||||| |||||||||||| |
|
|
| T |
1459607 |
gtgttaatatctgacaccaacataacagcgtctcttgtgattgcatacactcacttctattt |
1459668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 413 - 682
Target Start/End: Original strand, 2431888 - 2432174
Alignment:
| Q |
413 |
attactttgaatgaatctaattgcactaaccacaatccatatctttgttcacttggtgagatttagttaatttgattatactacaaaaatactattttca |
512 |
Q |
| |
|
|||| ||||||||| |||||| || |||||||||||||| ||||| ||||||||||||||||||||||||||| ||||| ||||||| ||||||||||| |
|
|
| T |
2431888 |
attattttgaatgagcctaattacaataaccacaatccatgtctttattcacttggtgagatttagttaatttggttatattacaaaa-tactattttca |
2431986 |
T |
|
| Q |
513 |
attaca--------------------ttaaatgaactgaattgttgtggcacactaggtagatctgttgaagaataaatttggatatgatgaagccttta |
592 |
Q |
| |
|
||| || |||||||||||||||| | ||||||| |||| ||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
2431987 |
atttcagaagtcttcggataattatattaaatgaactgaattat---ggcacacaaggtggatcttttgaagaataaatttggatatgatgaagcattta |
2432083 |
T |
|
| Q |
593 |
actacaaagaagaaccagacctcaatgcaactttaaaaaggtttgtttttaacatttttatggcag-attttaatcaatttgtttattgac |
682 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||||||| |||| |||||| ||||||||||| ||||||||||| || ||||||||| |
|
|
| T |
2432084 |
actacaaagaagaacctgacctcaatgcagctttaaaaaggtctgttattaacaattttatggcagaattttaatcaaattttttattgac |
2432174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 141 - 315
Target Start/End: Complemental strand, 2517471 - 2517297
Alignment:
| Q |
141 |
acaggtatgcctggaatgactgcttatgctggtttctttgaattaggcagtcctaagaaaggagagaatgtttatgtttcagctgcatccggtgctgttg |
240 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||||||| ||||| ||| || |||||||||||||||| |||||||||||| || ||||| |||| |
|
|
| T |
2517471 |
acaggtatgccaggaatgaccgcttatgctggtttctttgaagtaggctctccgaaaaaaggagagaatgtttttgtttcagctgcttctggtgcagttg |
2517372 |
T |
|
| Q |
241 |
gtcaacttgtaggtcaatttgcaaaactgcatggttgttatgttgttggaagtgctggaacaaaagaaaaggtat |
315 |
Q |
| |
|
|||||||||| || |||||||| ||| |||||||||| |||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
2517371 |
gtcaacttgttggacaatttgctaaattgcatggttgctatgttgttggaagtgctggaagtaaagagaaggtat |
2517297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 142 - 356
Target Start/End: Complemental strand, 2506497 - 2506282
Alignment:
| Q |
142 |
caggtatgcctggaatgactgcttatgctggtttctttgaattaggcagtcctaagaaaggagagaatgtttatgtttcagctgcatccggtgctgttgg |
241 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| ||||| | | ||||||||||||||||||| |||||||||||| || ||||| ||||| |
|
|
| T |
2506497 |
caggtatgccaggaatgactgcttatgctggtttctttgaagtaggcgctaccaagaaaggagagaatgtttttgtttcagctgcctctggtgcagttgg |
2506398 |
T |
|
| Q |
242 |
tcaacttgtaggtcaatttgcaaaactgcatggttgttatgttgttggaagtgctggaacaaaagaaaaggtatatg-catacttttgttgttatatgtg |
340 |
Q |
| |
|
||||||||| || ||||| || ||| |||||||||| || || |||||||||||||||| ||||| |||||||||| | | | ||||||||||||||| |
|
|
| T |
2506397 |
tcaacttgttggccaattcgctaaattgcatggttgctaagtcgttggaagtgctggaagtaaagagaaggtatatgtctgattgttgttgttatatgtg |
2506298 |
T |
|
| Q |
341 |
cttgcaaaaataatga |
356 |
Q |
| |
|
| |||| |||| |||| |
|
|
| T |
2506297 |
cctgcataaatgatga |
2506282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 141 - 315
Target Start/End: Complemental strand, 2497771 - 2497597
Alignment:
| Q |
141 |
acaggtatgcctggaatgactgcttatgctggtttctttgaattaggcagtcctaagaaaggagagaatgtttatgtttcagctgcatccggtgctgttg |
240 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||| || ||||| || | |
|
|
| T |
2497771 |
acaggtatgccaggaataactgcttatgctggtttctttgaactaggcagtcctaagaaaggagagactgtttttgtttcagctgcctctggtgcagtcg |
2497672 |
T |
|
| Q |
241 |
gtcaacttgtaggtcaatttgcaaaactgcatggttgttatgttgttggaagtgctggaacaaaagaaaaggtat |
315 |
Q |
| |
|
|||||||||| |||||||| || |||||| || ||||||||||| ||||||||||||| ||||| ||||||| |
|
|
| T |
2497671 |
gtcaacttgttggtcaattcgctaaactgacaggatgttatgttgtaggaagtgctggaagtaaagagaaggtat |
2497597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 141 - 315
Target Start/End: Complemental strand, 2513111 - 2512937
Alignment:
| Q |
141 |
acaggtatgcctggaatgactgcttatgctggtttctttgaattaggcagtcctaagaaaggagagaatgtttatgtttcagctgcatccggtgctgttg |
240 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||||| ||||| ||| ||||||||||||||||||| |||||||||||| || || || |||| |
|
|
| T |
2513111 |
acaggtatgccaggaatgactgcttattctggtttctttgaagtaggctctcccaagaaaggagagaatgtttttgtttcagctgcctctggagcagttg |
2513012 |
T |
|
| Q |
241 |
gtcaacttgtaggtcaatttgcaaaactgcatggttgttatgttgttggaagtgctggaacaaaagaaaaggtat |
315 |
Q |
| |
|
|||||||||| || ||||| || ||| |||||||||| ||||| |||||||||||||||| ||||| ||||||| |
|
|
| T |
2513011 |
gtcaacttgttggccaattcgctaaattgcatggttgctatgtcgttggaagtgctggaagtaaagagaaggtat |
2512937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 890 - 1006
Target Start/End: Complemental strand, 2516540 - 2516423
Alignment:
| Q |
890 |
ggatatcaatttatgtatattaggtactttccaggaaggcattgacatttactttgagaatgttggtgggaa-acacttgatgctgtacttttg-atatg |
987 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| || || ||||||||||||||||| ||| ||||| |
|
|
| T |
2516540 |
ggatatcaatttatgtaaattaggtactttccag-aaggcattgacatttactttgagaatgttgggggaaagacacttgatgctgtactcttgaatatg |
2516442 |
T |
|
| Q |
988 |
agagtccatgggcgcatac |
1006 |
Q |
| |
|
| | ||||||| ||||||| |
|
|
| T |
2516441 |
aaactccatggccgcatac |
2516423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 891 - 1026
Target Start/End: Original strand, 2432455 - 2432593
Alignment:
| Q |
891 |
gatatcaatttatgtatattaggtactttccaggaaggcattgacatttactttgagaatgttggtgggaa-acacttgatgctgtacttttg-atatga |
988 |
Q |
| |
|
||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||| || || |||||||| |||||||| ||| |||||| |
|
|
| T |
2432455 |
gatatcaatgtatgtaaattaggtactttccag-aaggcattgacatttactttgagaatgttgggggaaagacacttgacgctgtactcttgaatatga |
2432553 |
T |
|
| Q |
989 |
gagtccatgggcgcata-ctgtaggt-gaatgatctcaca |
1026 |
Q |
| |
|
| ||||||| |||||| ||||| || ||||||||||||| |
|
|
| T |
2432554 |
aactccatggccgcatacctgtaagtggaatgatctcaca |
2432593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 548 - 634
Target Start/End: Complemental strand, 2505798 - 2505712
Alignment:
| Q |
548 |
aggtagatctgttgaagaataaatttggatatgatgaagcctttaactacaaagaagaaccagacctcaatgcaactttaaaaaggt |
634 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||| | ||||||||||||||| || ||||||| |
|
|
| T |
2505798 |
aggtggatctgttgaagaataaatttggatacgatgaagccattaactacaaagaagagcaagacctcaatgcaacattgaaaaggt |
2505712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 548 - 614
Target Start/End: Complemental strand, 2512456 - 2512390
Alignment:
| Q |
548 |
aggtagatctgttgaagaataaatttggatatgatgaagcctttaactacaaagaagaaccagacct |
614 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||| |
|
|
| T |
2512456 |
aggtggatctgttgaagaataaatttggatacgatgaagccattaactacaaagaagaacaagacct |
2512390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 2498077 - 2498021
Alignment:
| Q |
8 |
atgtcccactttcctactatactggaattctcggtatgtattcaacaatttcaattt |
64 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
2498077 |
atgtcccactttcctactatactggaatactcggtatgttttcaacaatttcaattt |
2498021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 548 - 634
Target Start/End: Complemental strand, 2516732 - 2516646
Alignment:
| Q |
548 |
aggtagatctgttgaagaataaatttggatatgatgaagcctttaactacaaagaagaaccagacctcaatgcaactttaaaaaggt |
634 |
Q |
| |
|
|||| ||| |||| || |||||||||||||| ||||||||| |||||||||||||||||| |||||||||||| | |||||||||| |
|
|
| T |
2516732 |
aggtggatatgttaaaaaataaatttggatacgatgaagccattaactacaaagaagaacatgacctcaatgcagcattaaaaaggt |
2516646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 924 - 1006
Target Start/End: Complemental strand, 2496934 - 2496850
Alignment:
| Q |
924 |
gaaggcattgacatttactttgagaatgttggtgggaa-acacttgatgctgtacttttg-atatgagagtccatgggcgcatac |
1006 |
Q |
| |
|
||||||||||| |||||||||||||||||||| || || ||||||||||||||||| ||| | ||||||||||| || ||||||| |
|
|
| T |
2496934 |
gaaggcattgatatttactttgagaatgttggaggcaagacacttgatgctgtactcttgaacatgagagtccacggccgcatac |
2496850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #19
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 2517879 - 2517831
Alignment:
| Q |
16 |
ctttcctactatactggaattctcggtatgtattcaacaatttcaattt |
64 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2517879 |
ctttcgtactatactggaattcttggtatgtattcaacaatttcaattt |
2517831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 548 - 638
Target Start/End: Complemental strand, 2497179 - 2497089
Alignment:
| Q |
548 |
aggtagatctgttgaagaataaatttggatatgatgaagcctttaactacaaagaagaaccagacctcaatgcaactttaaaaaggtttgt |
638 |
Q |
| |
|
|||| ||||| ||||||||||||||||||| ||||| || || |||||||| ||||| || |||||| ||||| |||| ||||||||||| |
|
|
| T |
2497179 |
aggtggatcttttgaagaataaatttggatttgatggaggtttcaactacaaggaagagcctgacctcgatgcagctttgaaaaggtttgt |
2497089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 5e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 208 - 315
Target Start/End: Complemental strand, 946210 - 946103
Alignment:
| Q |
208 |
atgtttatgtttcagctgcatccggtgctgttggtcaacttgtaggtcaatttgcaaaactgcatggttgttatgttgttggaagtgctggaacaaaaga |
307 |
Q |
| |
|
|||||| ||||||||| ||||| |||||||| ||||||||||| |||||| |||| ||| |||||||||| ||||||||||||||||| || ||||||| |
|
|
| T |
946210 |
atgtttttgtttcagcagcatcaggtgctgtgggtcaacttgttggtcaacttgctaaattgcatggttgctatgttgttggaagtgccggctcaaaaga |
946111 |
T |
|
| Q |
308 |
aaaggtat |
315 |
Q |
| |
|
|||||||| |
|
|
| T |
946110 |
aaaggtat |
946103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 252 - 313
Target Start/End: Complemental strand, 6742713 - 6742652
Alignment:
| Q |
252 |
ggtcaatttgcaaaactgcatggttgttatgttgttggaagtgctggaacaaaagaaaaggt |
313 |
Q |
| |
|
||||||| || |||| ||| ||||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
6742713 |
ggtcaatctgtaaaattgcgtggtttttatgttgttggaagtgctggaactaaagaaaaggt |
6742652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 298
Target Start/End: Original strand, 32259345 - 32259418
Alignment:
| Q |
225 |
gcatccggtgctgttggtcaacttgtaggtcaatttgcaaaactgcatggttgttatgttgttggaagtgctgg |
298 |
Q |
| |
|
||||| |||||||| ||||| || | || |||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
32259345 |
gcatcaggtgctgtcggtcagctggccggacaatttgcaaaattgttgggttgttatgttgttggaagtgctgg |
32259418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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