View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4636-Insertion-4 (Length: 905)
Name: NF4636-Insertion-4
Description: NF4636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4636-Insertion-4 |
 | |
|
| [»] scaffold1042 (2 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 646; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 646; E-Value: 0
Query Start/End: Original strand, 7 - 893
Target Start/End: Original strand, 27792320 - 27793213
Alignment:
| Q |
7 |
aaatacaacatcattcattagtacacaacaacaattaataatactcttatgatatagaaatagcttgctcctttggtattattgggtatgaatgtttaga |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
27792320 |
aaatacaacatcattcattagtacacaacaacaattaataatactcttatgatatagaaataacttgctcctttggtattattgggtgtgaaggtttaga |
27792419 |
T |
|
| Q |
107 |
atattgatcaaattaatgatcaggaatcgtttgtgcattttgtttctgcaacccaagggggagaaatggtggttgtgctggatttgtagaaggacaccta |
206 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27792420 |
atattgatcaaattaatgaccaggaatcatttgtgcattttgtttctgcaacccaagggggagaaatggtggttgtgctggatttgtagaaggacaccta |
27792519 |
T |
|
| Q |
207 |
ccaaacaagcatccaagacatcttattccacaagcaccacaattaaaagggctaaaattaatgtttgcacaaaaaccattgcaacactgccaattcccaa |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||| |
|
|
| T |
27792520 |
ccaaacaagcatccaagacatcttattccacaagcaccacaattaaaagggctaaaattaatgtttgcacaaaaacgattacaacattgccaattcccaa |
27792619 |
T |
|
| Q |
307 |
taaatggacaacgaatcccacaaaatccacaattgtctgcatcacttgtaacatcaacacaacggtttctacaacatacggatcttggtggattttgtcc |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |
|
|
| T |
27792620 |
taaatggacaacgaatcccacaaaatccacaattgtctgcatcacttgtaacatcaacacaacggtttctacaacatacagatcttggtggattttctcc |
27792719 |
T |
|
| Q |
407 |
tgcactacagatccatggtcttagagcacaattatatgattcttgatccaaatcacccaccttaacaacgccattagtgttgatgggattttctttcact |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
27792720 |
tgcactacagatccatggtcttagagcacaattatatgattcttgatccaaatcacctaccttaacaacaacattagtgttgatgggattttctttcact |
27792819 |
T |
|
| Q |
507 |
tcatcttttggaatcagtgaaattggatctgcctctattttgatctgaaagataagaagtaatgctacaattgttacaaaatgaattgctagagtactca |
606 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27792820 |
tcatcttttggaatcagtgaaattggatttgcctctattttgatctgaaagataagaagtaatgctacaattgttacaaaatgaattgctagagtactca |
27792919 |
T |
|
| Q |
607 |
tattgaaaaagtgcaagaaagttatgannnnnnnnnnnnnnnngtggtgagaatagcaagattaggagaccctatatatacacgaacgtaagcgaaatga |
706 |
Q |
| |
|
||||||||||||||||||| || | | ||||||||||| || |||||||| ||||||||||||||||||| |||| ||||||| |
|
|
| T |
27792920 |
tattgaaaaagtgcaagaaggtggtcataatatttttttttttgtggtgagaatgccaggattaggaaaccctatatatacacgaacttaagtgaaatga |
27793019 |
T |
|
| Q |
707 |
gcatagcttttgtaacaagcttgaagaacatgcttttcctgcatgt-agagatgacaaccttgatttt--gttgctttaactctaatatatgtctgattc |
803 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
27793020 |
gcatagcttttgtaacaagcttgaagaacatgcttttcctgcatgtaagagatgacaaccttgatttttgtttgctttaactctaatatatgtctgattc |
27793119 |
T |
|
| Q |
804 |
cattttc-aaagactc-aaattgatttaaaccgtgtataagttcactt--atgtga-tacacaaaaaattttgaaaaata-tttatagacgaaata |
893 |
Q |
| |
|
||||||| ||||| || |||||||||| || ||||||| ||||||||| |||||| ||||| |||| ||| ||||||| ||||||||||||||| |
|
|
| T |
27793120 |
cattttcaaaagattcaaaattgattttaaacgtgtat-agttcactttaatgtgattacac-aaaattttataaaaatattttatagacgaaata |
27793213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 639; E-Value: 0
Query Start/End: Original strand, 7 - 876
Target Start/End: Original strand, 27785986 - 27786861
Alignment:
| Q |
7 |
aaatacaacatcattcattagtacacaacaacaattaataatactcttatgatatagaaatagcttgctcctttggtattattgggtatgaatgtttaga |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
27785986 |
aaatacaacatcattcattagtacacaacaacaattaataatactcttatgatatagaaataacttgctcctttggtattattgggtgtgaaggtttaga |
27786085 |
T |
|
| Q |
107 |
atattgatcaaattaatgatcaggaatcgtttgtgcattttgtttctgcaacccaagggggagaaatggtggttgtgctggatttgtagaaggacaccta |
206 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27786086 |
atattgatcaaattaatgaccaggaatcatttgtgcattttgtttctgcaacccaagggggagaaatggtggttgtgctggatttgtagaaggacaccta |
27786185 |
T |
|
| Q |
207 |
ccaaacaagcatccaagacatcttattccacaagcaccacaattaaaagggctaaaattaatgtttgcacaaaaaccattgcaacactgccaattcccaa |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||| |
|
|
| T |
27786186 |
ccaaacaagcatccaagacatcttattccacaagcaccacaattaaaagggctaaaattaatgtttgcacaaaaacgattacaacattgccaattcccaa |
27786285 |
T |
|
| Q |
307 |
taaatggacaacgaatcccacaaaatccacaattgtctgcatcacttgtaacatcaacacaacggtttctacaacatacggatcttggtggattttgtcc |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |
|
|
| T |
27786286 |
taaatggacaacgaatcccacaaaatccacaattgtctgcatcacttgtaacatcaacacaacggtttctacaacatacagatcttggtggattttctcc |
27786385 |
T |
|
| Q |
407 |
tgcactacagatccatggtcttagagcacaattatatgattcttgatccaaatcacccaccttaacaacgccattagtgttgatgggattttctttcact |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
27786386 |
tgcactacagatccatggtcttagagcacaattatatgattcttgatccaaatcacctaccttaacaacaacattagtgttgatgggattttctttcact |
27786485 |
T |
|
| Q |
507 |
tcatcttttggaatcagtgaaattggatctgcctctattttgatctgaaagataagaagtaatgctacaattgttacaaaatgaattgctagagtactca |
606 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
27786486 |
tcatcttttggaatcagtgaaattggatttgcctctattttgatctgaaagataagaagtaatgctacaattgttaccaaatgaattgctagagtactca |
27786585 |
T |
|
| Q |
607 |
tattgaaaaagtgcaagaaagttatgannnnnnnnnnnnnnnngtggtgagaatagcaagattaggagaccctatatatacacgaacgtaagcgaaatga |
706 |
Q |
| |
|
||||||||||||||||||| || | | ||||||||||| || |||||||| ||||||||||||||||||| |||| ||||||| |
|
|
| T |
27786586 |
tattgaaaaagtgcaagaaggtggtca-taattttttttttttgtggtgagaatgccaggattaggaaaccctatatatacacgaacttaagtgaaatga |
27786684 |
T |
|
| Q |
707 |
gcatagcttttgtaacaagcttgaagaacatgcttttcctgcatgt-agagatgacaaccttgatttt--gttgctttaactctaatatatgtctgattc |
803 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
27786685 |
gcatagcttttgtaacaagcttgaagaacatgcttttcctgcatgtaagagatgacaaccttgatttttgtttgctttaactctaatatatgtctgattc |
27786784 |
T |
|
| Q |
804 |
cattttc-aaagactc-aaattgatttaaaccgtgtataagttcactt--atgtga-tacacaaaaaattttgaaaaa |
876 |
Q |
| |
|
|||||| ||||| || |||||||||| || ||||||| ||||||||| |||||| |||||||||||||| |||||| |
|
|
| T |
27786785 |
tattttcaaaagattcaaaattgattttaaacgtgtat-agttcactttaatgtgattacacaaaaaatttagaaaaa |
27786861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 639; E-Value: 0
Query Start/End: Original strand, 7 - 876
Target Start/End: Original strand, 27789142 - 27790017
Alignment:
| Q |
7 |
aaatacaacatcattcattagtacacaacaacaattaataatactcttatgatatagaaatagcttgctcctttggtattattgggtatgaatgtttaga |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
27789142 |
aaatacaacatcattcattagtacacaacaacaattaataatactcttatgatatagaaataacttgctcctttggtattattgggtgtgaaggtttaga |
27789241 |
T |
|
| Q |
107 |
atattgatcaaattaatgatcaggaatcgtttgtgcattttgtttctgcaacccaagggggagaaatggtggttgtgctggatttgtagaaggacaccta |
206 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27789242 |
atattgatcaaattaatgaccaggaatcatttgtgcattttgtttctgcaacccaagggggagaaatggtggttgtgctggatttgtagaaggacaccta |
27789341 |
T |
|
| Q |
207 |
ccaaacaagcatccaagacatcttattccacaagcaccacaattaaaagggctaaaattaatgtttgcacaaaaaccattgcaacactgccaattcccaa |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||| |
|
|
| T |
27789342 |
ccaaacaagcatccaagacatcttattccacaagcaccacaattaaaagggctaaaattaatgtttgcacaaaaacgattacaacattgccaattcccaa |
27789441 |
T |
|
| Q |
307 |
taaatggacaacgaatcccacaaaatccacaattgtctgcatcacttgtaacatcaacacaacggtttctacaacatacggatcttggtggattttgtcc |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |
|
|
| T |
27789442 |
taaatggacaacgaatcccacaaaatccacaattgtctgcatcacttgtaacatcaacacaacggtttctacaacatacagatcttggtggattttctcc |
27789541 |
T |
|
| Q |
407 |
tgcactacagatccatggtcttagagcacaattatatgattcttgatccaaatcacccaccttaacaacgccattagtgttgatgggattttctttcact |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
27789542 |
tgcactacagatccatggtcttagagcacaattatatgattcttgatccaaatcacctaccttaacaacaacattagtgttgatgggattttctttcact |
27789641 |
T |
|
| Q |
507 |
tcatcttttggaatcagtgaaattggatctgcctctattttgatctgaaagataagaagtaatgctacaattgttacaaaatgaattgctagagtactca |
606 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
27789642 |
tcatcttttggaatcagtgaaattggatttgcctctattttgatctgaaagataagaagtaatgctacaattgttaccaaatgaattgctagagtactca |
27789741 |
T |
|
| Q |
607 |
tattgaaaaagtgcaagaaagttatgannnnnnnnnnnnnnnngtggtgagaatagcaagattaggagaccctatatatacacgaacgtaagcgaaatga |
706 |
Q |
| |
|
||||||||||||||||||| || | | ||||||||||| || |||||||| ||||||||||||||||||| |||| ||||||| |
|
|
| T |
27789742 |
tattgaaaaagtgcaagaaggtggtca-taattttttttttttgtggtgagaatgccaggattaggaaaccctatatatacacgaacttaagtgaaatga |
27789840 |
T |
|
| Q |
707 |
gcatagcttttgtaacaagcttgaagaacatgcttttcctgcatgt-agagatgacaaccttgatttt--gttgctttaactctaatatatgtctgattc |
803 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
27789841 |
gcatagcttttgtaacaagcttgaagaacatgcttttcctgcatgtaagagatgacaaccttgatttttgtttgctttaactctaatatatgtctgattc |
27789940 |
T |
|
| Q |
804 |
cattttc-aaagactc-aaattgatttaaaccgtgtataagttcactt--atgtga-tacacaaaaaattttgaaaaa |
876 |
Q |
| |
|
|||||| ||||| || |||||||||| || ||||||| ||||||||| |||||| |||||||||||||| |||||| |
|
|
| T |
27789941 |
tattttcaaaagattcaaaattgattttaaacgtgtat-agttcactttaatgtgattacacaaaaaatttagaaaaa |
27790017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 223 - 454
Target Start/End: Complemental strand, 8298517 - 8298286
Alignment:
| Q |
223 |
gacatcttattccacaagcaccacaattaaaagggctaaaattaatgtttgcacaaaaaccattgcaacactgccaattcccaataaatggacaacgaat |
322 |
Q |
| |
|
||||| || |||||||| |||||||| |||||||| ||||||| ||||||| ||| | ||| || ||||| | |||||| || || ||||||||| || |
|
|
| T |
8298517 |
gacatgttcttccacaatcaccacaactaaaagggttaaaatttatgtttgtacacacaccgttacaacatttccaattaccgatcaatggacaaataac |
8298418 |
T |
|
| Q |
323 |
cccacaaaatccacaattgtctgcatcacttgtaacatcaacacaacggtttctacaacatacggatcttggtggattttgtcctgcactacagatccat |
422 |
Q |
| |
|
|||||||| |||||||||| | |||| |||| |||||||||||||| ||||| ||||||| | |||||||||| || ||||| |||||| |||||| |
|
|
| T |
8298417 |
tccacaaaacccacaattgtttaaatcatttgttacatcaacacaacgatttctgcaacataaagctcttggtggaaattctcctgtactacatatccat |
8298318 |
T |
|
| Q |
423 |
ggtcttagagcacaattatatgattcttgatc |
454 |
Q |
| |
|
||| || | |||||||| |||| ||||||| |
|
|
| T |
8298317 |
ggtgttgcaccacaattaggtgatacttgatc |
8298286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 27785918 - 27785974
Alignment:
| Q |
7 |
aaatacaacatcattcattagtacacaacaacaattaataatactc-ttatgatata |
62 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||||| || |||||||||| |
|
|
| T |
27785918 |
aaatacaacatcattcataagtacacaacaacaattgataataatctttatgatata |
27785974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 27789074 - 27789130
Alignment:
| Q |
7 |
aaatacaacatcattcattagtacacaacaacaattaataatactc-ttatgatata |
62 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||||| || |||||||||| |
|
|
| T |
27789074 |
aaatacaacatcattcataagtacacaacaacaattgataataatctttatgatata |
27789130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 27792252 - 27792308
Alignment:
| Q |
7 |
aaatacaacatcattcattagtacacaacaacaattaataatactc-ttatgatata |
62 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||||| || |||||||||| |
|
|
| T |
27792252 |
aaatacaacatcattcataagtacacaacaacaattgataataatctttatgatata |
27792308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 4e-22; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 708 - 828
Target Start/End: Original strand, 40761898 - 40762023
Alignment:
| Q |
708 |
catagcttttgtaacaagcttgaagaacatgcttttcctgcatgt-agagatgacaaccttgatttt--gttgctttaactctaatatatgtctgattcc |
804 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| | ||||| ||||||||||||||| ||||| ||||||||||||| ||| |||||||||||| |
|
|
| T |
40761898 |
catagcttttgtaacaagcttgaagaacatgtttttcttacatgtaagagatgacaaccttaatttttgtttgctttaactcttatacatgtctgattcc |
40761997 |
T |
|
| Q |
805 |
a-ttttcaaagactc-aaattgattt |
828 |
Q |
| |
|
| |||| ||||| || |||||||||| |
|
|
| T |
40761998 |
acttttgaaagattcgaaattgattt |
40762023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 700 - 805
Target Start/End: Original strand, 40749884 - 40749992
Alignment:
| Q |
700 |
gaaatgagcatagcttttgtaacaagcttgaagaacatgcttttcctgcatgt-agagatgacaaccttgatttt--gttgctttaactctaatatatgt |
796 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| ||||| | ||| | ||||||||||||||||||||| ||||||||||||| ||| |||| |
|
|
| T |
40749884 |
gaaatgatcatagcttttgtaacaagcttgaagaacatgtttttcttacatataagagatgacaaccttgatttttgtttgctttaactcttatacatgt |
40749983 |
T |
|
| Q |
797 |
ctgattcca |
805 |
Q |
| |
|
|||||||| |
|
|
| T |
40749984 |
ttgattcca |
40749992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 191 - 424
Target Start/End: Original strand, 26123870 - 26124103
Alignment:
| Q |
191 |
tgtagaaggacacctaccaaacaagcatccaagacatcttattccacaagcaccacaattaaaagggctaaaattaatgtttgcacaaaaaccattgcaa |
290 |
Q |
| |
|
|||| ||||||||||||||||||||||| | ||||| | |||||||| | ||||||||||||||| ||| ||| |||| || ||| | |||||| ||| |
|
|
| T |
26123870 |
tgtaaaaggacacctaccaaacaagcataaaggacatatctttccacaacctccacaattaaaagggttaatatttatgtctgaacatataccattacaa |
26123969 |
T |
|
| Q |
291 |
cactgccaattcccaataaatggacaacgaatcccacaaaatccacaattgtctgcatcacttgtaacatcaacacaacggtttctacaacatacggatc |
390 |
Q |
| |
|
|| || |||| |||| ||||||||| || ||||||||| ||||| || | ||||| | |||||||| ||||| || |||| ||||||||| || |
|
|
| T |
26123970 |
cattgaaaatttccaactaatggacaaataaccccacaaaacccacagttattcacatcattcgtaacatcgacacaccgatttccacaacataccattc |
26124069 |
T |
|
| Q |
391 |
ttggtggattttgtcctgcactacagatccatgg |
424 |
Q |
| |
|
|||||||| ||| ||||| ||||| |||||||| |
|
|
| T |
26124070 |
ttggtggaatttctcctgtgctacatatccatgg |
26124103 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 40749189 - 40749243
Alignment:
| Q |
8 |
aatacaacatcattcattagtacacaacaacaattaataatactcttatgatata |
62 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
40749189 |
aatacaacatcattcataagtacataacaacaattaataataatcttatgatata |
40749243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 40761191 - 40761245
Alignment:
| Q |
8 |
aatacaacatcattcattagtacacaacaacaattaataatactcttatgatata |
62 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
40761191 |
aatacaacatcattcataagtacataacaacaattaataataatcttatgatata |
40761245 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 232 - 385
Target Start/End: Original strand, 40749424 - 40749577
Alignment:
| Q |
232 |
ttccacaagcaccacaattaaaagggctaaaattaatgtttgcacaaaaaccattgcaacactgccaattcccaataaatggacaacgaatcccacaaaa |
331 |
Q |
| |
|
|||||||||||||||| ||||||||| |||| || |||||| |||| | ||| ||||| |||||| | |||| ||| ||| ||| ||||| | |
|
|
| T |
40749424 |
ttccacaagcaccacagttaaaagggttaaagtttatgtttacacacacaccccaacaacaatgccaactaccaaaccttgggcaagcaattccacacac |
40749523 |
T |
|
| Q |
332 |
tccacaattgtctgcatcacttgtaacatcaacacaacggtttctacaacatac |
385 |
Q |
| |
|
|||||||||||||||||| | |||||||||||| ||||||||||||||||| |
|
|
| T |
40749524 |
cccacaattgtctgcatcaaaagaaacatcaacacaccggtttctacaacatac |
40749577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 232 - 385
Target Start/End: Original strand, 40761426 - 40761579
Alignment:
| Q |
232 |
ttccacaagcaccacaattaaaagggctaaaattaatgtttgcacaaaaaccattgcaacactgccaattcccaataaatggacaacgaatcccacaaaa |
331 |
Q |
| |
|
|||||||||||||||| ||||||||| |||| || |||||| |||| | ||| ||||| |||||| | |||| ||| ||| ||| ||||| | |
|
|
| T |
40761426 |
ttccacaagcaccacagttaaaagggttaaagtttatgtttacacacacaccccaacaacaatgccaactaccaaaccttgggcaagcaattccacacac |
40761525 |
T |
|
| Q |
332 |
tccacaattgtctgcatcacttgtaacatcaacacaacggtttctacaacatac |
385 |
Q |
| |
|
|||||||||||||||||| | |||||||||||| ||||||||||||||||| |
|
|
| T |
40761526 |
cccacaattgtctgcatcaaaagaaacatcaacacaccggtttctacaacatac |
40761579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1042 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold1042
Description:
Target: scaffold1042; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 580 - 526
Alignment:
| Q |
8 |
aatacaacatcattcattagtacacaacaacaattaataatactcttatgatata |
62 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
580 |
aatacaacatcattcataagtacataacaacaattaataataatcttatgatata |
526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1042; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 232 - 385
Target Start/End: Complemental strand, 345 - 192
Alignment:
| Q |
232 |
ttccacaagcaccacaattaaaagggctaaaattaatgtttgcacaaaaaccattgcaacactgccaattcccaataaatggacaacgaatcccacaaaa |
331 |
Q |
| |
|
|||||||||||||||| ||||||||| |||| || |||||| |||| | ||| ||||| |||||| | |||| ||| ||| ||| ||||| | |
|
|
| T |
345 |
ttccacaagcaccacagttaaaagggttaaagtttatgtttacacacacaccccaacaacaatgccaactaccaaaccttgggcaagcaattccacacac |
246 |
T |
|
| Q |
332 |
tccacaattgtctgcatcacttgtaacatcaacacaacggtttctacaacatac |
385 |
Q |
| |
|
|||||||||||||||||| | |||||||||||| ||||||||||||||||| |
|
|
| T |
245 |
cccacaattgtctgcatcaaaagaaacatcaacacaccggtttctacaacatac |
192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 232 - 427
Target Start/End: Complemental strand, 16101070 - 16100875
Alignment:
| Q |
232 |
ttccacaagcaccacaattaaaagggctaaaattaatgtttgcacaaaaaccattgcaacactgccaattcccaataaatggacaacgaatcccacaaaa |
331 |
Q |
| |
|
|||||||| | ||||| || |||||| ||||| |||||||||||||||||||| ||||| ||||||| |||||| |||||||||| |||||| | |
|
|
| T |
16101070 |
ttccacaacccccacagtttaaagggtcgaaatttatgtttgcacaaaaaccattacaacagcgccaattaccaatagttggacaacgacgcccacatat |
16100971 |
T |
|
| Q |
332 |
tccacaattgtctgcatcacttgtaacatcaacacaacggtttctacaacatacggatcttggtggattttgtcctgcactacagatccatggtct |
427 |
Q |
| |
|
| |||||||| |||| | | || ||| || |||||||||||||||||||| |||||||||| | || ||| |||||| ||||||||||| |
|
|
| T |
16100970 |
cctacaattgttaacatctttagaaatatccacgcaacggtttctacaacatacatatcttggtggttattctccattactacatatccatggtct |
16100875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 261 - 427
Target Start/End: Complemental strand, 16170311 - 16170145
Alignment:
| Q |
261 |
aaattaatgtttgcacaaaaaccattgcaacactgccaattcccaataaatggacaacgaatcccacaaaatccacaattgtctgcatcacttgtaacat |
360 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| ||||||| |||||| |||||||||| ||| || | | |||||||| |||| | | || || |
|
|
| T |
16170311 |
aaatttatgtttgcacaaaaaccattacaacagcgccaattaccaatagttggacaacgacgcccgcatatcctacaattgttaacatctttagaaatat |
16170212 |
T |
|
| Q |
361 |
caacacaacggtttctacaacatacggatcttggtggattttgtcctgcactacagatccatggtct |
427 |
Q |
| |
|
| || |||||||||||||||||||| |||||||||| | || ||| |||||| ||||||||||| |
|
|
| T |
16170211 |
ccacgcaacggtttctacaacatacatatcttggtgggtattctccattactacatatccatggtct |
16170145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 232 - 320
Target Start/End: Complemental strand, 16174134 - 16174046
Alignment:
| Q |
232 |
ttccacaagcaccacaattaaaagggctaaaattaatgtttgcacaaaaaccattgcaacactgccaattcccaataaatggacaacga |
320 |
Q |
| |
|
|||||||| | ||||| || |||||| ||||| |||||||||||||||||||| ||||| ||||||| |||||| |||||||||| |
|
|
| T |
16174134 |
ttccacaacccccacagtttaaagggtcgaaatttatgtttgcacaaaaaccattacaacagcgccaattaccaatagttggacaacga |
16174046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 232 - 320
Target Start/End: Complemental strand, 16177929 - 16177841
Alignment:
| Q |
232 |
ttccacaagcaccacaattaaaagggctaaaattaatgtttgcacaaaaaccattgcaacactgccaattcccaataaatggacaacga |
320 |
Q |
| |
|
|||||||| | ||||| || |||||| ||||| |||||||||||||||||||| ||||| ||||||| |||||| |||||||||| |
|
|
| T |
16177929 |
ttccacaacccccacagtttaaagggtcgaaatttatgtttgcacaaaaaccattacaacagcgccaattaccaatagttggacaacga |
16177841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 261 - 320
Target Start/End: Complemental strand, 16099210 - 16099151
Alignment:
| Q |
261 |
aaattaatgtttgcacaaaaaccattgcaacactgccaattcccaataaatggacaacga |
320 |
Q |
| |
|
||||| ||||||| |||||||||||| ||||| |||||||| |||||| |||||||||| |
|
|
| T |
16099210 |
aaatttatgtttgtacaaaaaccattacaacagtgccaattaccaatagttggacaacga |
16099151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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