View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4636-Insertion-5 (Length: 881)
Name: NF4636-Insertion-5
Description: NF4636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4636-Insertion-5 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 659; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 659; E-Value: 0
Query Start/End: Original strand, 140 - 881
Target Start/End: Complemental strand, 33499722 - 33498975
Alignment:
| Q |
140 |
tgggaatcagataaatacaatgtgaaattagggtttggtaaaaatgagagtgcttggaataagttacaagattaagagaaagcac--tacgcatgtaagc |
237 |
Q |
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| T |
33499722 |
tgggaatcagataaatacaatgtgaaattagggtttggtaaaaatgagagtgcttggaataagttacaagattaagagaaagcacactacgcatgtaagc |
33499623 |
T |
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| Q |
238 |
aagtaagagaggaagtagatagcaaagggaaggaca--tataaggtttaaccaaactatttatagaagaggttcacctaataataaggttaataagcttg |
335 |
Q |
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| T |
33499622 |
aagtaagagaggaagtagatagcaaagggaaggacacatataaggtttaaccaaactatttatagaagaggttcacctaataataaggttaataagcttg |
33499523 |
T |
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| Q |
336 |
ttttgcctnnnnnnnnn-tctaaatcccgacaagcttcatattttacgatatacatcatgacatacttacttcaaactatggaaatggatattccatttg |
434 |
Q |
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| T |
33499522 |
ttttgcctaataaaaaaatctaaatcctgacaagcttcatattttacgatatacatcatgacatacttacttcaaacgaaggaaatggatattccatttg |
33499423 |
T |
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| Q |
435 |
tactaattttcaaagtaaactttattaatttaaataaaccatatgcagtttacaatattggaaaagcaaacacaaaaagcaaataatttaactagtttaa |
534 |
Q |
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| T |
33499422 |
tactaattttcaaagtaaactttattaatttaaataaaccatatgcagtttacaatattagaaaagcaaacacaaaaagcaaataatttaactagtttaa |
33499323 |
T |
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| Q |
535 |
acaccataaaatgtctcataggaccatcaaagatggccaattctaactgtttccgatagga-ggaaaataaaattcatacggaatgaaaagacaagtttt |
633 |
Q |
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| T |
33499322 |
acaccataaaatgtctcataggaccatcaaagatggccaattctaactgtttccgatcggaaggaaaataaaattcatacggaatgaaaagacaagtttt |
33499223 |
T |
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| Q |
634 |
atgatcaaaattttaagcgatcctcgtcataatttctaaagctgcttgcttgtaagtttcctccatcgagtttgcgccaagtgaagcttgttttgcctgc |
733 |
Q |
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| T |
33499222 |
atgatcaaaattttaagcgatcctcgtcataatttctaaagctgcttgcttgtaagtttcctccatcgagtttgcgccaagtgaagcttgttttgcctgc |
33499123 |
T |
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| Q |
734 |
aaaatcaacacaattcaattgagctattcgcactcacactactcaagagaagagaaggtttgaaacttacatgggccataatcatgtagaagtttccatt |
833 |
Q |
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| T |
33499122 |
aaaatcaacacaattcaattgagctattcgctctcacactactcaagagaagagaaggtttgaaacttacatgggccataatcatgtagaagtttccatt |
33499023 |
T |
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| Q |
834 |
tgcattgcacataatgttggcagaaataacatcaatcttatgtttctc |
881 |
Q |
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| T |
33499022 |
tgcattgcacataatgttggcagaaataacatcaatcttatgtttctc |
33498975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 778 - 881
Target Start/End: Complemental strand, 33485867 - 33485764
Alignment:
| Q |
778 |
aagagaagagaaggtttgaaacttacatgggccataatcatgtagaagtttccatttgcattgcacataatgttggcagaaataacatcaatcttatgtt |
877 |
Q |
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| T |
33485867 |
aagaggagagaaggtttgaaacttacatgggccataatcatgtagaagtttccatttgcattgcacataatgttggcagaaataacatcaatcttatgtt |
33485768 |
T |
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| Q |
878 |
tctc |
881 |
Q |
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|||| |
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| T |
33485767 |
tctc |
33485764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 7 - 93
Target Start/End: Complemental strand, 33499805 - 33499719
Alignment:
| Q |
7 |
acttcggtttgggaagtatgcaaggtgaggtttgacgtgtcaagaccaacataaacaaaggagaaggaataagaaggagatcctggg |
93 |
Q |
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| T |
33499805 |
acttcggtttgggaagtatgcaaggtgaggtttgacgtgtcaagaccaacataaacaaaggagaaggaataagaaggagatcctggg |
33499719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 627 - 781
Target Start/End: Complemental strand, 33486212 - 33486058
Alignment:
| Q |
627 |
aagttttatgatcaaaattttaagcgatcctcgtcataatttctaaagctgcttgcttgtaagtttcctccatcgagtttgcgccaagtgaagcttgttt |
726 |
Q |
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| T |
33486212 |
aagttttatgatcaaaattctaagcgatccacatcataatttctccagccgcatgcttgtatgtttccttcattgaatttgcgtcatgtgaagcttgttt |
33486113 |
T |
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| Q |
727 |
tgcctgcaaaatcaacacaattcaattgagctattcgcactcacactactcaaga |
781 |
Q |
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| T |
33486112 |
tgcctgcaaaattaagacaattcaattgagctattcacactcgtactactcaaga |
33486058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 376 - 566
Target Start/End: Complemental strand, 33486393 - 33486210
Alignment:
| Q |
376 |
ttttacgatatacatcatgacatacttacttcaaactatggaaatggatattccatttgtactaattttcaaagtaaactttattaatttaaataaacca |
475 |
Q |
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|||||||||||| |||||||||||||| ||||| || ||||||||||||| ||||| ||||||| |||||||| ||||| |||| ||||||||| |
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| T |
33486393 |
ttttacgatataaatcatgacatactt----caaacgataaaaatggatattccgtttgt--taattttaaaagtaaattttatgaattcaaataaacct |
33486300 |
T |
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| Q |
476 |
tatgcagtttacaatattggaaaagcaaacacaaaaagcaaataatt-taactagtttaaacaccat-aaaatgtctcataggaccatcaaag |
566 |
Q |
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| T |
33486299 |
tatgcagtttac---accggaaaagcaaacacaaaaagcatataattaaaactagtttaaacaccataaaaattgctcttaggaccatcaaag |
33486210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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