View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4636-Insertion-6 (Length: 838)
Name: NF4636-Insertion-6
Description: NF4636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4636-Insertion-6 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 352 - 838
Target Start/End: Original strand, 33368172 - 33368662
Alignment:
| Q |
352 |
tcatggttgtgattagagtaagagtgaagactatagtgaagaaagtgatgatgaagataaaaagatggttagagagaaagggtactgttgttgatgattg |
451 |
Q |
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| T |
33368172 |
tcatggttgtgattagagtaagagtgaagactatagtgaagaaagtgatgatgaagataaaaagatggttagagagaaagggtactgttgttgatgattg |
33368271 |
T |
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| Q |
452 |
cttgtgatgaggagaagggtggaggagtatgagttttggatttgaattgttcttcatttttctttttggggaatagagagaacaaatagtattatcactc |
551 |
Q |
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| T |
33368272 |
cttgtgatgaggagaagggtgtaggagtatgagttttggatttgaattgttcttcatttttctttttggggaatagagagaacaaatagtattatcactc |
33368371 |
T |
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| Q |
552 |
tatcaagaatgagataagtacatgcatttttgaataatgcttc-tttgtatttgagtatctaatcgtatgcacagagacttacaaaacaaataaatgctg |
650 |
Q |
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| T |
33368372 |
tatcaagaatgagataagtacatgtatttttgaataatgcttcttttgtatttgagtatctgatcgtatgcacatagacttacaaaacaaataaatggtg |
33368471 |
T |
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| Q |
651 |
aaatagtgtaagatttgacgacaatgctctcaaggattttcagtgtaatttggtcactattg-aaatttaatagacagaaccgag-caattttttatata |
748 |
Q |
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| T |
33368472 |
aaatagtgtgagatttgatgacaatgctctcaaggattttcagtgtaatttgctcactattgaaaatttaatagacagaaccgagtaaattttttatata |
33368571 |
T |
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| Q |
749 |
-aagatgaaaaaccctcgcagagtnnnnnnnnnnnnnnnnnnggtttttcacgttatacaatggtcttcgtgtctcatatataaataggaa |
838 |
Q |
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| T |
33368572 |
gaagatgaaaaaccctcgcagagtaaaaaaaaaaaaaaaaaggttttttcacgttatacaatggtcttcgtgtcttatatataaataggaa |
33368662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 7 - 294
Target Start/End: Original strand, 33367827 - 33368114
Alignment:
| Q |
7 |
actttggatactcactaactttgcttgtgaactgaacatcgtaagcttcgatacctgggttggactgttcgaattttgagataatatattcgttttcatc |
106 |
Q |
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| T |
33367827 |
actttggatactcactaactttgcttgtgaactgaacatcgtaagcttcgatacctgggttggactgttcgaattttgagataatatattcgttttcatc |
33367926 |
T |
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| Q |
107 |
gatgaaaacagtgcggccattgttattcagtgcagaccagagaagggactcttgggtgagaccaaagataaggaagttggggtttggtgtaaggtgaaga |
206 |
Q |
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| T |
33367927 |
gatgaaaacagtgcgaccattgttattcagtgcagaccagagaagggactcttgggtgagaccaaagataaggaagttggggtttggtgtaaggtgaaga |
33368026 |
T |
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| Q |
207 |
gtggttgttatggcgttgatttctgaaaaggacatggatttggtggtggagttcgaggaggaggcgtagtgaaccagagctttagtta |
294 |
Q |
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| T |
33368027 |
gtggttgttatggcgttgatttctgaaaaggacatggatttggtggtggagttcgaggaggaggcgtagtgaacgagagctttagtta |
33368114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 174; E-Value: 4e-93
Query Start/End: Original strand, 12 - 277
Target Start/End: Original strand, 33372033 - 33372298
Alignment:
| Q |
12 |
ggatactcactaactttgcttgtgaactgaacatcgtaagcttcgatacctgggttggactgttcgaattttgagataatatattcgttttcatcgatga |
111 |
Q |
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| T |
33372033 |
ggatactcactaactttggttgtgaactgaacatcataagcttctattcctgggttggactgttcaaattttgagatcatgtattcgttttcgtcgatga |
33372132 |
T |
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| Q |
112 |
aaacagtgcggccattgttattcagtgcagaccagagaagggactcttgggtgagaccaaagataaggaagttggggtttggtgtaaggtgaagagtggt |
211 |
Q |
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| T |
33372133 |
aaacagtgcggccattttggtttagtgcagaccagagaagtgactcatgggtgagaccaaagatgaggaagttggggtgtggtgtaaggtgaagagtggt |
33372232 |
T |
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| Q |
212 |
tgttatggcgttgatttctgaaaaggacatggatttggtggtggagttcgaggaggaggcgtagtg |
277 |
Q |
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| T |
33372233 |
tgttatagcgttgatttcttcaaaggacatggatttggtggtggtgtttaaggaggaggcatagtg |
33372298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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