View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4636-Insertion-8 (Length: 704)

Name: NF4636-Insertion-8
Description: NF4636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4636-Insertion-8
NF4636-Insertion-8
[»] chr6 (9 HSPs)
chr6 (452-688)||(8927286-8927522)
chr6 (452-688)||(8937543-8937779)
chr6 (173-378)||(8927599-8927795)
chr6 (173-378)||(8937856-8938052)
chr6 (8-89)||(8927879-8927960)
chr6 (8-89)||(8938136-8938217)
chr6 (8-89)||(8931807-8931886)
chr6 (8-85)||(8970875-8970952)
chr6 (8-85)||(8949608-8949685)
[»] chr2 (2 HSPs)
chr2 (453-537)||(7599688-7599772)
chr2 (463-535)||(35963353-35963425)
[»] chr3 (2 HSPs)
chr3 (463-535)||(34083553-34083625)
chr3 (463-535)||(8257504-8257576)
[»] chr7 (1 HSPs)
chr7 (463-537)||(6649958-6650032)
[»] chr4 (1 HSPs)
chr4 (463-535)||(6689669-6689741)


Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-116; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 452 - 688
Target Start/End: Complemental strand, 8927522 - 8927286
Alignment:
Q  452 ctttagaatattatgaaactatgcatatcctttctatgcaattttatagacgtctttgtaaaaaatcatctcaaaatttgatttctttagagccaaataa 551  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8927522 ctttagaatattataaaactatgcatatcctttctatgtaattttatagacgtctttgtaaaaaatcatctcaaaatttgatttctttagagccaaataa 8927423  T
Q  552 ggtgcctcataagcaattttatgtttgtttctaggatcttcttttgtttataatcacatgcaatgtccgacgtgtgtggtgtttgacacttgtattgata 651  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  8927422 ggtgcctcataagcaattttatgtttatttctagaatcttcttttgtttataatcacatgcaatgtccgacatgtgtggtgtttgacacttgtattgata 8927323  T
Q  652 taaaattgttaacgaaaaataatgtcgtactaaagtc 688  Q
    |||||||| ||||||||||||||||||||||||||||    
T  8927322 taaaattgctaacgaaaaataatgtcgtactaaagtc 8927286  T

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Target: chr6; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 452 - 688
Target Start/End: Complemental strand, 8937779 - 8937543
Alignment:
Q  452 ctttagaatattatgaaactatgcatatcctttctatgcaattttatagacgtctttgtaaaaaatcatctcaaaatttgatttctttagagccaaataa 551  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8937779 ctttagaatattataaaactatgcatatcctttctatgtaattttatagacgtctttgtaaaaaatcatctcaaaatttgatttctttagagccaaataa 8937680  T
Q  552 ggtgcctcataagcaattttatgtttgtttctaggatcttcttttgtttataatcacatgcaatgtccgacgtgtgtggtgtttgacacttgtattgata 651  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  8937679 ggtgcctcataagcaattttatgtttatttctagaatcttcttttgtttataatcacatgcaatgtccgacatgtgtggtgtttgacacttgtattgata 8937580  T
Q  652 taaaattgttaacgaaaaataatgtcgtactaaagtc 688  Q
    |||||||| ||||||||||||||||||||||||||||    
T  8937579 taaaattgctaacgaaaaataatgtcgtactaaagtc 8937543  T

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Target: chr6; HSP #3
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 173 - 378
Target Start/End: Complemental strand, 8927795 - 8927599
Alignment:
Q  173 aatctcaatggccactctgtttgagatataaaatgaattcgaagaaaaatgaaaaatataatcaacatttcaatgaagatgtactagactacaaccacat 272  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||         ||||||||||||| ||    
T  8927795 aatctcaatggccactctgtttgagatataaaatgaattcgaacaaaaatgaaaaatataatcaacatttcaatg---------tagactacaaccatat 8927705  T
Q  273 gtgtgtttgaatgaagttacttatgtacatgtgtacgcacgcatgcacgtgcacgcaccttattgagcaattacacaagcacaaattaaccccctcaaac 372  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  8927704 gtgtgtttgaatgaagttacttatgtacatgtgtacgcacgcatgcacgtgcacacaccttattgagcaattacacaagcacaaatcaaccccctcaaac 8927605  T

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Target: chr6; HSP #4
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 173 - 378
Target Start/End: Complemental strand, 8938052 - 8937856
Alignment:
Q  173 aatctcaatggccactctgtttgagatataaaatgaattcgaagaaaaatgaaaaatataatcaacatttcaatgaagatgtactagactacaaccacat 272  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||         ||||||||||||| ||    
T  8938052 aatctcaatggccactctgtttgagatataaaatgaattcgaacaaaaatgaaaaatataatcaacatttcaatg---------tagactacaaccatat 8937962  T
Q  273 gtgtgtttgaatgaagttacttatgtacatgtgtacgcacgcatgcacgtgcacgcaccttattgagcaattacacaagcacaaattaaccccctcaaac 372  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  8937961 gtgtgtttgaatgaagttacttatgtacatgtgtacgcacgcatgcacgtgcacacaccttattgagcaattacacaagcacaaatcaaccccctcaaac 8937862  T

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Target: chr6; HSP #5
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 8927960 - 8927879
Alignment:
Q  8 ggaacaaatggtggaaaattggcttaaagtgacatcaggttgtaaagactctctacacacaatgaattatattttcctctgc 89  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8927960 ggaacaaatggtggaaaattggcttcaagtgacatcaggttgtaaagactctctacacacaatgaattatattttcctctgc 8927879  T

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Target: chr6; HSP #6
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 8938217 - 8938136
Alignment:
Q  8 ggaacaaatggtggaaaattggcttaaagtgacatcaggttgtaaagactctctacacacaatgaattatattttcctctgc 89  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8938217 ggaacaaatggtggaaaattggcttcaagtgacatcaggttgtaaagactctctacacacaatgaattatattttcctctgc 8938136  T

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Target: chr6; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 8931886 - 8931807
Alignment:
Q  8 ggaacaaatggtggaaaattggcttaaagtgacatcaggttgtaaagactctctacacacaatgaattatattttcctctgc 89  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  8931886 ggaacaaatggtggaaaattggcttcaagtgacatcaggttgtaaaga--ctctacacacaatgaattatattttcctctgc 8931807  T

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Target: chr6; HSP #8
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 8970875 - 8970952
Alignment:
Q  8 ggaacaaatggtggaaaattggcttaaagtgacatcaggttgtaaagactctctacacacaatgaattatattttcct 85  Q
    ||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  8970875 ggaacaaatggtggaaaattggcttcaagtgaaatcaggttgcaaagactctctacacacaatgaattatattttcct 8970952  T

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Target: chr6; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 8949685 - 8949608
Alignment:
Q  8 ggaacaaatggtggaaaattggcttaaagtgacatcaggttgtaaagactctctacacacaatgaattatattttcct 85  Q
    ||||||||||||||||||||||||| |||||| ||||||||| |||||||||||| ||||||||||||||||||||||    
T  8949685 ggaacaaatggtggaaaattggcttcaagtgagatcaggttgcaaagactctctatacacaatgaattatattttcct 8949608  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 453 - 537
Target Start/End: Original strand, 7599688 - 7599772
Alignment:
Q  453 tttagaatattatgaaactatgcatatcctttctatgcaattttatagacgtctttgtaaaaaatcatctcaaaatttgatttct 537  Q
    ||||||||| ||||||||| ||||| || |||||||  | ||||  ||| ||||||| |||| ||||||||||||||||||||||    
T  7599688 tttagaatactatgaaactttgcatgtcttttctatatacttttgaagaagtctttgcaaaatatcatctcaaaatttgatttct 7599772  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 463 - 535
Target Start/End: Original strand, 35963353 - 35963425
Alignment:
Q  463 tatgaaactatgcatatcctttctatgcaattttatagacgtctttgtaaaaaatcatctcaaaatttgattt 535  Q
    ||||||||| | || ||||||| |||||| |||||||||||||| || ||| ||| | ||||||||| |||||    
T  35963353 tatgaaactttacagatcctttttatgcatttttatagacgtctctgcaaataatgaactcaaaattcgattt 35963425  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 463 - 535
Target Start/End: Complemental strand, 34083625 - 34083553
Alignment:
Q  463 tatgaaactatgcatatcctttctatgcaattttatagacgtctttgtaaaaaatcatctcaaaatttgattt 535  Q
    ||||||||| | |||||||||| |||| | ||||||||| ||||||| ||| ||| | |||||||||||||||    
T  34083625 tatgaaactttacatatcctttttatgtatttttatagatgtctttgcaaataatgagctcaaaatttgattt 34083553  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 463 - 535
Target Start/End: Original strand, 8257504 - 8257576
Alignment:
Q  463 tatgaaactatgcatatcctttctatgcaattttatagacgtctttgtaaaaaatcatctcaaaatttgattt 535  Q
    ||||||||| |||||||||||| |||  | ||||||||| ||||||| ||| ||| | |||||||||| ||||    
T  8257504 tatgaaactttgcatatcctttttatatatttttatagatgtctttgcaaacaatgagctcaaaatttaattt 8257576  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 463 - 537
Target Start/End: Original strand, 6649958 - 6650032
Alignment:
Q  463 tatgaaactatgcatatcctttctatgcaattttatagacgtctttgtaaaaaatcatctcaaaatttgatttct 537  Q
    ||||||||| | ||| ||||||||||| | ||||||| | ||||||||| | ||||| ||||||||| |||||||    
T  6649958 tatgaaacttttcatgtcctttctatgtatttttatatatgtctttgtagacaatcaactcaaaattagatttct 6650032  T

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Target: chr4 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 463 - 535
Target Start/End: Complemental strand, 6689741 - 6689669
Alignment:
Q  463 tatgaaactatgcatatcctttctatgcaattttatagacgtctttgtaaaaaatcatctcaaaatttgattt 535  Q
    ||||||||| | |||||||||| |||| | ||||||||| |||| || ||| ||| | |||||||||||||||    
T  6689741 tatgaaactttacatatcctttttatgtatttttatagatgtctctgcaaataatgagctcaaaatttgattt 6689669  T

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