View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4636-Insertion-9 (Length: 607)
Name: NF4636-Insertion-9
Description: NF4636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4636-Insertion-9 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 530 - 607
Target Start/End: Complemental strand, 2319706 - 2319629
Alignment:
| Q |
530 |
ggaagttcttaggctaaattttgaaaatgaaaaataagaaaaagtggttaaacacgacgtatatattggttcaaatag |
607 |
Q |
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| T |
2319706 |
ggaagttcttaggctaaattttgaaaatggaaaataaaaaaaactggttaagcacgacatatatagtggttcaaatag |
2319629 |
T |
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Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 151 - 316
Target Start/End: Original strand, 6802704 - 6802870
Alignment:
| Q |
151 |
aaagcttggaccttcctttcttgttctaatctttgtatacaatgtaacaatggattcttcttcacatgagggggtagaagacgacgagtagcaaacttgg |
250 |
Q |
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| T |
6802704 |
aaaggttggaccttcctttcttgatctaatctctttatacaacgtaacaatgaatcatacttcgcaggagtggacataagatgacaagtagaagacttcg |
6802803 |
T |
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| Q |
251 |
ttctcttcttcttaaca-gaggcatctttgtcctatcatatagcttgaagacaaacataccgaaaca |
316 |
Q |
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| T |
6802804 |
ttctcttcttcataacatgggtcatcttggatctatcatatagcttgaaggcagacataccgaaaca |
6802870 |
T |
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Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 105 - 214
Target Start/End: Original strand, 45299043 - 45299152
Alignment:
| Q |
105 |
agggacaaacacctttgttagagcagacgtttgggcaagacctctcaaagcttggaccttcctttcttgttctaatctttgtatacaatgtaacaatgga |
204 |
Q |
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| T |
45299043 |
agggacatgcacctttgttggaggagatgttttgacaagatccctcaaaacttggaccttcctttcttgatctaatttctctatagaacgtaacaaataa |
45299142 |
T |
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| Q |
205 |
ttcttcttca |
214 |
Q |
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| T |
45299143 |
ttcttcttca |
45299152 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 309
Target Start/End: Original strand, 32940856 - 32940937
Alignment:
| Q |
228 |
aagacgacgagtagcaaacttggttctcttcttcttaacagaggcatctttgtcctatcatatagcttgaagacaaacatac |
309 |
Q |
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| T |
32940856 |
aagatgacgggtagcaaactttgttttctttttcataataatggaatctttgtcatatcatataacttgaagacatacatac |
32940937 |
T |
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