View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4636_high_1_N (Length: 429)

Name: NF4636_high_1_N
Description: NF4636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4636_high_1_N
NF4636_high_1_N
[»] chr7 (3 HSPs)
chr7 (163-401)||(32682076-32682320)
chr7 (1-160)||(32681881-32682040)
chr7 (109-160)||(25187117-25187168)
[»] chr2 (3 HSPs)
chr2 (112-160)||(3208433-3208481)
chr2 (112-157)||(10587144-10587189)
chr2 (112-160)||(4413255-4413303)
[»] chr3 (5 HSPs)
chr3 (112-160)||(32546665-32546713)
chr3 (112-150)||(4669852-4669890)
chr3 (110-160)||(39661372-39661422)
chr3 (112-160)||(44703-44751)
chr3 (112-160)||(4763981-4764029)
[»] chr1 (5 HSPs)
chr1 (112-160)||(868590-868638)
chr1 (112-160)||(31737511-31737559)
chr1 (112-160)||(7213113-7213161)
chr1 (112-160)||(19035349-19035397)
chr1 (112-160)||(22346765-22346813)
[»] chr8 (3 HSPs)
chr8 (112-157)||(38815167-38815212)
chr8 (112-160)||(18804483-18804531)
chr8 (112-160)||(22589525-22589573)
[»] scaffold0406 (1 HSPs)
scaffold0406 (112-160)||(6758-6806)
[»] scaffold0309 (1 HSPs)
scaffold0309 (112-160)||(5194-5242)
[»] scaffold0148 (1 HSPs)
scaffold0148 (112-160)||(33120-33168)
[»] scaffold0009 (1 HSPs)
scaffold0009 (112-160)||(102976-103024)
[»] chr4 (2 HSPs)
chr4 (112-160)||(30940921-30940969)
chr4 (112-160)||(40392743-40392791)


Alignment Details
Target: chr7 (Bit Score: 165; Significance: 4e-88; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 163 - 401
Target Start/End: Original strand, 32682076 - 32682320
Alignment:
Q  163 ataaactaattttaacttcacttgcaaatttactttattgattagttttcattgatcgttggataaattatccataannnnnnnnnnnnggtcaattacc 262  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||            |||||| ||||    
T  32682076 ataaactaattttaacttcacgtgcaaatttgctttattgattagttttcattggtcgttggataaattatccataatttttagtttttggtcaaatacc 32682175  T
Q  263 ctcctactggc-----tactactaccataagctcatggg-acaaattatccataattatttcagggtaactaagagcaaacttatatatatttacatctc 356  Q
    |||||||||||     ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32682176 ctcctactggcctggctactactaccataagctcatggggacaaattatccataattatttcagggtaactaagagcaaacttatatatatttacatctc 32682275  T
Q  357 cgggtaaatacaacataacaaatatacttaacccgaaagaagaag 401  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  32682276 cgggtaaatacaacataacaaatatacttaacccgaaagaagaag 32682320  T

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Target: chr7; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 32681881 - 32682040
Alignment:
Q  1 ggatcaggttgtagcaactcaattttaccctgaatatttcattttgcttataaatttagcaagacatatgttatccttgaaaatttgtggagtaaccttc 100  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32681881 ggatcaggttgaagcaactcaattttactctgaatatttcattttgcttataaatttagcaagacatatgttatccttgaaaatttgtggagtaaccttc 32681980  T
Q  101 aaatggtgtctaaaaaggtttggcggcgcagcttgttgcacgtttgccttctattcaagt 160  Q
    |||||||||| ||||||| ||||||||||||||| |||  |  |||||||||||||||||    
T  32681981 aaatggtgtccaaaaaggcttggcggcgcagcttattgtccacttgccttctattcaagt 32682040  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 160
Target Start/End: Original strand, 25187117 - 25187168
Alignment:
Q  109 tctaaaaaggtttggcggcgcagcttgttgcacgtttgccttctattcaagt 160  Q
    ||||||||| | | ||||||||||||||||| || |||||||||||||||||    
T  25187117 tctaaaaagatctagcggcgcagcttgttgcccgcttgccttctattcaagt 25187168  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 112 - 160
Target Start/End: Original strand, 3208433 - 3208481
Alignment:
Q  112 aaaaaggtttggcggcgcagcttgttgcacgtttgccttctattcaagt 160  Q
    |||||||||| ||||||||||||||||| || |||||||||||||||||    
T  3208433 aaaaaggtttagcggcgcagcttgttgcccgcttgccttctattcaagt 3208481  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 157
Target Start/End: Original strand, 10587144 - 10587189
Alignment:
Q  112 aaaaaggtttggcggcgcagcttgttgcacgtttgccttctattca 157  Q
    |||||||| | |||||| |||||||||| |||||||||||||||||    
T  10587144 aaaaaggtctagcggcgtagcttgttgcccgtttgccttctattca 10587189  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 160
Target Start/End: Original strand, 4413255 - 4413303
Alignment:
Q  112 aaaaaggtttggcggcgcagcttgttgcacgtttgccttctattcaagt 160  Q
    |||||||| | ||||||||||||||||| |  |||||||||||||||||    
T  4413255 aaaaaggtctagcggcgcagcttgttgcccacttgccttctattcaagt 4413303  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 160
Target Start/End: Complemental strand, 32546713 - 32546665
Alignment:
Q  112 aaaaaggtttggcggcgcagcttgttgcacgtttgccttctattcaagt 160  Q
    |||||||| | ||||||||||||||||| || |||||||||||||||||    
T  32546713 aaaaaggtctagcggcgcagcttgttgcccgcttgccttctattcaagt 32546665  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 150
Target Start/End: Original strand, 4669852 - 4669890
Alignment:
Q  112 aaaaaggtttggcggcgcagcttgttgcacgtttgcctt 150  Q
    |||||||||||||||||||||||||||| || |||||||    
T  4669852 aaaaaggtttggcggcgcagcttgttgcccgcttgcctt 4669890  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 160
Target Start/End: Original strand, 39661372 - 39661422
Alignment:
Q  110 ctaaaaaggtttggcggcgcagcttgttgcacgtttgccttctattcaagt 160  Q
    ||||||||| |||||||||||||||||||| ||  ||| ||||||||||||    
T  39661372 ctaaaaaggcttggcggcgcagcttgttgcccgcgtgctttctattcaagt 39661422  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 160
Target Start/End: Complemental strand, 44751 - 44703
Alignment:
Q  112 aaaaaggtttggcggcgcagcttgttgcacgtttgccttctattcaagt 160  Q
    |||||||| | ||||||||| ||||||| || |||||||||||||||||    
T  44751 aaaaaggtctagcggcgcagtttgttgcccgcttgccttctattcaagt 44703  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 160
Target Start/End: Original strand, 4763981 - 4764029
Alignment:
Q  112 aaaaaggtttggcggcgcagcttgttgcacgtttgccttctattcaagt 160  Q
    ||||||| |||| |||||| |||||||| || |||||||||||||||||    
T  4763981 aaaaaggcttggtggcgcaacttgttgcccgcttgccttctattcaagt 4764029  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 160
Target Start/End: Original strand, 868590 - 868638
Alignment:
Q  112 aaaaaggtttggcggcgcagcttgttgcacgtttgccttctattcaagt 160  Q
    |||||||| | ||||||||||||||||| || |||||||||||||||||    
T  868590 aaaaaggtctagcggcgcagcttgttgcccgcttgccttctattcaagt 868638  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 160
Target Start/End: Original strand, 31737511 - 31737559
Alignment:
Q  112 aaaaaggtttggcggcgcagcttgttgcacgtttgccttctattcaagt 160  Q
    ||||||| |||||||||||||||||||   |||||||||||||||||||    
T  31737511 aaaaaggcttggcggcgcagcttgttgtctgtttgccttctattcaagt 31737559  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 160
Target Start/End: Complemental strand, 7213161 - 7213113
Alignment:
Q  112 aaaaaggtttggcggcgcagcttgttgcacgtttgccttctattcaagt 160  Q
    |||||||| | |||||||| |||||||| || |||||||||||||||||    
T  7213161 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctattcaagt 7213113  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 160
Target Start/End: Complemental strand, 19035397 - 19035349
Alignment:
Q  112 aaaaaggtttggcggcgcagcttgttgcacgtttgccttctattcaagt 160  Q
    |||||||| | ||||||||||||||||  || |||||||||||||||||    
T  19035397 aaaaaggtctagcggcgcagcttgttgtccgattgccttctattcaagt 19035349  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 160
Target Start/End: Complemental strand, 22346813 - 22346765
Alignment:
Q  112 aaaaaggtttggcggcgcagcttgttgcacgtttgccttctattcaagt 160  Q
    |||||||| | ||||||||||||||||  || |||||||||||||||||    
T  22346813 aaaaaggtctagcggcgcagcttgttgtccgcttgccttctattcaagt 22346765  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 157
Target Start/End: Complemental strand, 38815212 - 38815167
Alignment:
Q  112 aaaaaggtttggcggcgcagcttgttgcacgtttgccttctattca 157  Q
    ||||||| || ||||||||||||||||| || ||||||||||||||    
T  38815212 aaaaaggcttagcggcgcagcttgttgcccgcttgccttctattca 38815167  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 160
Target Start/End: Complemental strand, 18804531 - 18804483
Alignment:
Q  112 aaaaaggtttggcggcgcagcttgttgcacgtttgccttctattcaagt 160  Q
    |||||||| | |||||||||||||||||  | |||||||||||||||||    
T  18804531 aaaaaggtctagcggcgcagcttgttgcctgcttgccttctattcaagt 18804483  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 160
Target Start/End: Original strand, 22589525 - 22589573
Alignment:
Q  112 aaaaaggtttggcggcgcagcttgttgcacgtttgccttctattcaagt 160  Q
    |||||||| | ||||||||||||||||| || ||||||| |||||||||    
T  22589525 aaaaaggtctagcggcgcagcttgttgcccgcttgccttttattcaagt 22589573  T

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Target: scaffold0406 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 160
Target Start/End: Complemental strand, 6806 - 6758
Alignment:
Q  112 aaaaaggtttggcggcgcagcttgttgcacgtttgccttctattcaagt 160  Q
    |||||||| | ||| ||||||||||||| || |||||||||||||||||    
T  6806 aaaaaggtctagcgccgcagcttgttgcccgcttgccttctattcaagt 6758  T

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Target: scaffold0309 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0309
Description:

Target: scaffold0309; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 160
Target Start/End: Complemental strand, 5242 - 5194
Alignment:
Q  112 aaaaaggtttggcggcgcagcttgttgcacgtttgccttctattcaagt 160  Q
    |||||||| | ||||||||||||||||| || |||| ||||||||||||    
T  5242 aaaaaggtctagcggcgcagcttgttgcccgcttgcattctattcaagt 5194  T

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Target: scaffold0148 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 160
Target Start/End: Complemental strand, 33168 - 33120
Alignment:
Q  112 aaaaaggtttggcggcgcagcttgttgcacgtttgccttctattcaagt 160  Q
    ||||||| ||||||| ||||||||||||  | |||||||||||||||||    
T  33168 aaaaaggcttggcggtgcagcttgttgcctgcttgccttctattcaagt 33120  T

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Target: scaffold0009 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 160
Target Start/End: Complemental strand, 103024 - 102976
Alignment:
Q  112 aaaaaggtttggcggcgcagcttgttgcacgtttgccttctattcaagt 160  Q
    |||||||| | |||||||| |||||||| || |||||||||||||||||    
T  103024 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctattcaagt 102976  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 160
Target Start/End: Original strand, 30940921 - 30940969
Alignment:
Q  112 aaaaaggtttggcggcgcagcttgttgcacgtttgccttctattcaagt 160  Q
    |||||||| | ||| ||||||||||||| || |||||||||||||||||    
T  30940921 aaaaaggtctagcgacgcagcttgttgcccgcttgccttctattcaagt 30940969  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 160
Target Start/End: Original strand, 40392743 - 40392791
Alignment:
Q  112 aaaaaggtttggcggcgcagcttgttgcacgtttgccttctattcaagt 160  Q
    |||||||| | ||||||||||||||||  || |||||||||||||||||    
T  40392743 aaaaaggtctagcggcgcagcttgttgtccgcttgccttctattcaagt 40392791  T

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