View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4636_low_1 (Length: 451)
Name: NF4636_low_1
Description: NF4636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4636_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 14 - 435
Target Start/End: Original strand, 33367412 - 33367832
Alignment:
| Q |
14 |
tactcctacacaattttactgggagctcgaacttttgcaaaactcaaaactctcaccattttcggtttcactctttatcacaaaatgccttaactgatct |
113 |
Q |
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||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33367412 |
tactcctacacaattttactggg-gcttgaacttttgcaaaactcaaaactctcaccattttcggtttcactctttatcacaaaatgccttaactgatct |
33367510 |
T |
|
| Q |
114 |
acattgttaaccaaattctcttcacaaagaaactcatagctgaaaatcttctccacttctctccaaaaatcatgaacaaaaacgtgagtttttcccactt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33367511 |
acattgttaaccaaattctcttcacaaagaaactcatagctgaaaatcttctccacttctctccaaaaatcatgaacaaaaacgtgagtttttcccactt |
33367610 |
T |
|
| Q |
214 |
tcttgctacgagctaacactgccgcagtaaatattgccgacattctccctgaagctgccggaaagtaccctcttggcccatcaactagaatcacgtccca |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33367611 |
tcttgctacgagctaacactgccgcagtaaatattgccgacattctccctggagctgccggaaagtaccctcttggcccatcaactagaatcacgtccca |
33367710 |
T |
|
| Q |
314 |
agagacttggtaaatgtggttcggcatatcattgattccgagtttacattctgagaataacaaattttgtaccggcttaccatcacgtttggactcttct |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
33367711 |
agagacttggtaaatgtggttcggcatatcattgattccgagtttacattctgagaataacaaattttgtaccggcttacaatcacgtttggactcttct |
33367810 |
T |
|
| Q |
414 |
tttgcatgagaaagcaactttg |
435 |
Q |
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|||||||||||||||||||||| |
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| T |
33367811 |
tttgcatgagaaagcaactttg |
33367832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 42 - 427
Target Start/End: Original strand, 33371640 - 33372025
Alignment:
| Q |
42 |
gaacttttgcaaaactcaaaactctcaccattttcggtttcactctttatcacaaaatgccttaactgatctacattgttaaccaaattctcttcacaaa |
141 |
Q |
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|||||| ||||||||||| |||| |||||| | |||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
33371640 |
gaacttctgcaaaactcagaactttcaccactgtcggtttcactcttcaccacaaaatgccctaactgatctacattgttaaccaaattctcttcacaaa |
33371739 |
T |
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| Q |
142 |
gaaactcatagctgaaaatcttctccacttctctccaaaaatcatgaacaaaaacgtgagtttttcccactttcttgctacgagctaacactgccgcagt |
241 |
Q |
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|||||||||||||||||||||||||||||||||| | ||||||||||||||| | |||||||||||||| ||||||||| | ||| |||||||| || || |
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| T |
33371740 |
gaaactcatagctgaaaatcttctccacttctcttccaaaatcatgaacaaatatgtgagtttttcccattttcttgctcctagccaacactgctgctgt |
33371839 |
T |
|
| Q |
242 |
aaatattgccgacattctccctgaagctgccggaaagtaccctcttggcccatcaactagaatcacgtcccaagagacttggtaaatgtggttcggcata |
341 |
Q |
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||| || |||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||| | |
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| T |
33371840 |
aaagatcgccgacattctccccggagctgccggaaagtaccctcttggcccatcaacaagaatcacatcccaagagacttggtaaatgtgattcggcaaa |
33371939 |
T |
|
| Q |
342 |
tcattgattccgagtttacattctgagaataacaaattttgtaccggcttaccatcacgtttggactcttcttttgcatgagaaag |
427 |
Q |
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|| ||||||||||||||||| ||||||||||||||||| || || || |||| ||| |||| |||| | |||||||||||||||| |
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| T |
33371940 |
tcgttgattccgagtttacactctgagaataacaaattctgcacaggtttacaatcgtgtttagactttgcttttgcatgagaaag |
33372025 |
T |
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