View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4637-Insertion-1 (Length: 1007)
Name: NF4637-Insertion-1
Description: NF4637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4637-Insertion-1 |
 | |
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| [»] chr7 (10 HSPs) |
| |
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Alignment Details
Target: chr7 (Bit Score: 535; Significance: 0; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 417 - 1007
Target Start/End: Original strand, 10181070 - 10181664
Alignment:
| Q |
417 |
aagctcatagttgagtttgtcagaaggtagaccaaatggaagatagtccaatagtaagaggtaaagggaaaccatagaaagctataggtcaaatcattaa |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10181070 |
aagctcatagttgagtttgtcagaaggtagaccaaatggaagatagtccaatagtaagaggtaaagggaaaccatagaaagctataggtcaaatcattaa |
10181169 |
T |
|
| Q |
517 |
gaaggatttcagagtaaatggtctatcgttatagataattaacggtatggtaattatgatgtcatttgattcatgtaactaaccccgaactgatgagaaa |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10181170 |
gaaggatttcagagtaaatggtctatcgttatagataattaacgatatggatattatgatgtcatttgattcatgtaactaaccccgaactgatgagaaa |
10181269 |
T |
|
| Q |
617 |
aggctttgatcgcctctgttgttgttcttgttgtgtaatctaacctaacttattacttttttggatttacatatgaattttctctattaggtgacccatg |
716 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10181270 |
aggctttgatcgcctctgtagttgttcttgttgtgtaatcaaagctaacttattacttttttggatttacatatgaattttctctattaggtgacccatg |
10181369 |
T |
|
| Q |
717 |
acaatctctataacatggttcttatgtctttgtcatatagtatgaatgcttagtggaaggttgcggtttgaaattcaaaagctacaaaagtaggcagcag |
816 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10181370 |
acaatctctataacatggttcttatgtctttgtcatatagtatgaatgcttagtggaaggttgcggtttgaaattcaaaagctacaaaagtaggcagcac |
10181469 |
T |
|
| Q |
817 |
catctagttgacaagcataaattcccgacgtcattcgagtttttcaagaaggctcttccttc-aagaaacacaggataaagtctcaacgcaaaaagcctt |
915 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
10181470 |
catctagttgacaagcataaattcccgacgtcattcgagtttttcaagaaggctcttccttcaaagaaacacaggataaagtctcaacgcaaaaagcctt |
10181569 |
T |
|
| Q |
916 |
ctc-aaaggaggatacttcaggaatgatggaagtgg-aaatgcagctatggatgacctcgtttcagcagtatctaga-taaatacttcagacacc |
1007 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
10181570 |
ctcaaaaggaggatacttcaggaatgatggaagtggaaaatgcagctatggatgacctcgtttcagcagtatctagattaaatacttcagacacc |
10181664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 417 - 1007
Target Start/End: Original strand, 10186110 - 10186704
Alignment:
| Q |
417 |
aagctcatagttgagtttgtcagaaggtagaccaaatggaagatagtccaatagtaagaggtaaagggaaaccatagaaagctataggtcaaatcattaa |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10186110 |
aagctcatagttgagtttgtcagaaggtagaccaaatggaagatagtccaatagtaagaggtaaagggaaaccatagaaagctataggtcaaatcattaa |
10186209 |
T |
|
| Q |
517 |
gaaggatttcagagtaaatggtctatcgttatagataattaacggtatggtaattatgatgtcatttgattcatgtaactaaccccgaactgatgagaaa |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10186210 |
gaaggatttcagagtaaatggtctatcgttatagataattaacgatatggatattatgatgtcatttgattcatgtaactaaccccgaactgatgagaaa |
10186309 |
T |
|
| Q |
617 |
aggctttgatcgcctctgttgttgttcttgttgtgtaatctaacctaacttattacttttttggatttacatatgaattttctctattaggtgacccatg |
716 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10186310 |
aggctttgatcgcctctgtagttgttcttgttgtgtaatcaaagctaacttattacttttttggatttacatatgaattttctctattaggtgacccatg |
10186409 |
T |
|
| Q |
717 |
acaatctctataacatggttcttatgtctttgtcatatagtatgaatgcttagtggaaggttgcggtttgaaattcaaaagctacaaaagtaggcagcag |
816 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10186410 |
acaatctctataacatggttcttatgtctttgtcatatagtatgaatgcttagtggaaggttgcggtttgaaattcaaaagctacaaaagtaggcagcac |
10186509 |
T |
|
| Q |
817 |
catctagttgacaagcataaattcccgacgtcattcgagtttttcaagaaggctcttccttc-aagaaacacaggataaagtctcaacgcaaaaagcctt |
915 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10186510 |
catctagttgacaagcataaattcccgacgtcattcgagtttttcaagaaggctcttccttcaaagaaacacaggataaagtctcaacgcaaaaagcctt |
10186609 |
T |
|
| Q |
916 |
ctc-aaaggaggatacttcaggaatgatggaagtgg-aaatgcagctatggatgacctcgtttcagcagtatctaga-taaatacttcagacacc |
1007 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
10186610 |
ctcaaaaggaggatacttcaggaatgatggaagtggaaaatgcagctatggatgacctcgtttcagcagtatctagattaaatacttcagacacc |
10186704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 8 - 387
Target Start/End: Original strand, 10180661 - 10181040
Alignment:
| Q |
8 |
gtcatttcaaacaatgttcagaatatcttttttcctttattacatcctttctgtcttctatttcatttaatgtttagagctcatagttgagtttgttaga |
107 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
10180661 |
gtcatttcagacaatgttcagaatatcttttttcctttattacatcctttctgtcttctatttaatttaatgtttagagctcatagttgagtttgttaga |
10180760 |
T |
|
| Q |
108 |
aggtagatcaaagcaaagatagtccattattagttagtggtaaagcgaaaccagagaaaactataggccaacccattaagaaggatttggaatcaaatgt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10180761 |
aggtagatcaaagcaaagatagtccattattagttagtggtaaagcgaaaccagagaaaactataagccaacccattaagaaggatttggaatcaaatgt |
10180860 |
T |
|
| Q |
208 |
tcagtcactagagaattaataatacactcaatctttgttttcaaaatcattccaataacctttccacaaaaagaaacgcccaaacacaccacattccaac |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10180861 |
tcagtcactagagaattaataatacactcaatctttgatttcaaaatcattccaataacctttccacaaaaagaaacgcccaaacacaccacattccaac |
10180960 |
T |
|
| Q |
308 |
aacccatgttatctctacgtagtaacaatcgccgtaataactaataacaacccatgttaatgaatttctttcttacgtcc |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10180961 |
aacccatgttatctctacgtagtaacaatcgccgtaataactaataacaacccatgttaatgaatttctttcttacgtcc |
10181040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 8 - 387
Target Start/End: Original strand, 10185701 - 10186080
Alignment:
| Q |
8 |
gtcatttcaaacaatgttcagaatatcttttttcctttattacatcctttctgtcttctatttcatttaatgtttagagctcatagttgagtttgttaga |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
10185701 |
gtcatttcaaacaatgttcagaatatcttttttcctttattacatcctttctgtcttctatttaatttaatgtttagagctcatagttgagtttgttaga |
10185800 |
T |
|
| Q |
108 |
aggtagatcaaagcaaagatagtccattattagttagtggtaaagcgaaaccagagaaaactataggccaacccattaagaaggatttggaatcaaatgt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10185801 |
aggtagatcaaagcaaagatagtccattattagttagtggtaaagcgaaaccagagaaaactataagccaacccattaagaaggatttggaatcaaatgt |
10185900 |
T |
|
| Q |
208 |
tcagtcactagagaattaataatacactcaatctttgttttcaaaatcattccaataacctttccacaaaaagaaacgcccaaacacaccacattccaac |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10185901 |
tcagtcactagagaattaataatacactcaatctttgatttcaaaatcattccaataacctttccacaaaaagaaacgcccaaacacaccacattccaac |
10186000 |
T |
|
| Q |
308 |
aacccatgttatctctacgtagtaacaatcgccgtaataactaataacaacccatgttaatgaatttctttcttacgtcc |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10186001 |
aacccatgttatctctacgtagtaacaatcaccgtaataactaataacaacccatgttaatgaatttctttcttacgtcc |
10186080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 132; E-Value: 5e-68
Query Start/End: Original strand, 715 - 979
Target Start/End: Original strand, 10164106 - 10164375
Alignment:
| Q |
715 |
tgacaatctctataacatggttcttatgtctttgtcatatagtatgaatgcttagtggaaggttgcggtttgaaattcaaaagctacaaaagtaggcagc |
814 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10164106 |
tgacaatctcttcaacatggttcttatgtctttgtcatatagtatga-tgcttagtggaaggttgcggtttgaaattcaaaagccacaaaagtaggcagc |
10164204 |
T |
|
| Q |
815 |
agcatctagttgacaagcataaattcccgac--gtcattcgag-tttttcaagaaggctcttccttc-aagaaacacaggataaagtctcaacgcaaaaa |
910 |
Q |
| |
|
||||||| ||| |||||||||| |||||||| ||||||||| |||||||| ||| ||| ||||| |||||||| || |||||| |||||||||||| |
|
|
| T |
10164205 |
agcatctggttaacaagcataagttcccgacatatcattcgagttttttcaaaaagtctcagccttcaaagaaacagagagtaaagtgtcaacgcaaaaa |
10164304 |
T |
|
| Q |
911 |
gccttctca-aaggaggatacttcaggaatgatggaagtgg-aaatgcagctatggatgacctcgtttcag |
979 |
Q |
| |
|
| |||||| ||||||||||||||||||||||| ||||||| ||||||||| || ||| |||| ||||||| |
|
|
| T |
10164305 |
actttctcataaggaggatacttcaggaatgatagaagtggaaaatgcagccatagataaccttgtttcag |
10164375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 65 - 195
Target Start/End: Original strand, 10181051 - 10181178
Alignment:
| Q |
65 |
ctatttcatttaatgtttagagctcatagttgagtttgttagaaggtagatcaaagcaaagatagtccattattagttagtggtaaagcgaaaccagaga |
164 |
Q |
| |
|
|||||| |||| ||||||| ||||||||||||||||||| |||||||||| |||| |||||||||| | |||| || ||||||| ||||||| ||| |
|
|
| T |
10181051 |
ctattttattttatgtttaaagctcatagttgagtttgtcagaaggtagaccaaatggaagatagtcc---aatagtaagaggtaaagggaaaccataga |
10181147 |
T |
|
| Q |
165 |
aaactataggccaacccattaagaaggattt |
195 |
Q |
| |
|
|| ||||||| ||| ||||||||||||||| |
|
|
| T |
10181148 |
aagctataggtcaaatcattaagaaggattt |
10181178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 65 - 195
Target Start/End: Original strand, 10186091 - 10186218
Alignment:
| Q |
65 |
ctatttcatttaatgtttagagctcatagttgagtttgttagaaggtagatcaaagcaaagatagtccattattagttagtggtaaagcgaaaccagaga |
164 |
Q |
| |
|
|||||| |||| ||||||| ||||||||||||||||||| |||||||||| |||| |||||||||| | |||| || ||||||| ||||||| ||| |
|
|
| T |
10186091 |
ctattttattttatgtttaaagctcatagttgagtttgtcagaaggtagaccaaatggaagatagtcc---aatagtaagaggtaaagggaaaccataga |
10186187 |
T |
|
| Q |
165 |
aaactataggccaacccattaagaaggattt |
195 |
Q |
| |
|
|| ||||||| ||| ||||||||||||||| |
|
|
| T |
10186188 |
aagctataggtcaaatcattaagaaggattt |
10186218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 418 - 525
Target Start/End: Original strand, 10180738 - 10180848
Alignment:
| Q |
418 |
agctcatagttgagtttgtcagaaggtagaccaaatggaagatagtcc---aatagtaagaggtaaagggaaaccatagaaagctataggtcaaatcatt |
514 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||| |||||||||| | |||| || ||||||| ||||||| ||||| ||||| | ||| |||| |
|
|
| T |
10180738 |
agctcatagttgagtttgttagaaggtagatcaaagcaaagatagtccattattagttagtggtaaagcgaaaccagagaaaactataagccaacccatt |
10180837 |
T |
|
| Q |
515 |
aagaaggattt |
525 |
Q |
| |
|
||||||||||| |
|
|
| T |
10180838 |
aagaaggattt |
10180848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 418 - 525
Target Start/End: Original strand, 10185778 - 10185888
Alignment:
| Q |
418 |
agctcatagttgagtttgtcagaaggtagaccaaatggaagatagtcc---aatagtaagaggtaaagggaaaccatagaaagctataggtcaaatcatt |
514 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||| |||||||||| | |||| || ||||||| ||||||| ||||| ||||| | ||| |||| |
|
|
| T |
10185778 |
agctcatagttgagtttgttagaaggtagatcaaagcaaagatagtccattattagttagtggtaaagcgaaaccagagaaaactataagccaacccatt |
10185877 |
T |
|
| Q |
515 |
aagaaggattt |
525 |
Q |
| |
|
||||||||||| |
|
|
| T |
10185878 |
aagaaggattt |
10185888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 269 - 327
Target Start/End: Original strand, 10188550 - 10188608
Alignment:
| Q |
269 |
ttccacaaaaagaaacgcccaaacacaccacattccaacaacccatgttatctctacgt |
327 |
Q |
| |
|
||||| |||||||||| |||||||||| | |||| |||||||| ||||||||||||||| |
|
|
| T |
10188550 |
ttccataaaaagaaacacccaaacacatcccattacaacaaccaatgttatctctacgt |
10188608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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