View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4637-Insertion-2 (Length: 905)
Name: NF4637-Insertion-2
Description: NF4637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4637-Insertion-2 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 804; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 804; E-Value: 0
Query Start/End: Original strand, 7 - 905
Target Start/End: Original strand, 1811062 - 1811956
Alignment:
| Q |
7 |
agaaagtccatcaaagatccattgggacacccactatcgggctgcccgggtcatgctccagatgtctaatcctaggcgtgaggggtgtgtgttacgagtt |
106 |
Q |
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| T |
1811062 |
agaaagtccatcaaagatccattgggacacccactatcgggttgcccgggtcatgctccggatgtctaatcctaggcgtgaggggtgtgtgttacgagtt |
1811161 |
T |
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| Q |
107 |
ctacattggatgagataaagtctgaacttgttctacattggatgagataaagtctgaaaatgggtttataaatgggagacatccctctctccataagtct |
206 |
Q |
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| T |
1811162 |
ctacattggatgagataaagtctgaacttgttctacattggatgagataaagtctgaaaatgggtttataaatgggagacatccctctctccacaagtct |
1811261 |
T |
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| Q |
207 |
atttggtaggattaagttagaccaaaactaaattctaagtagactatatggagacttgagttagaccaaaaccaaatggaatatgtaagttgaagtggaa |
306 |
Q |
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| T |
1811262 |
atttggtaggattaagttagaccaaaactaaattctaagtagactatatggagacttgagttaaaccaaaaccaaatggaatatgtaagttgaagtggaa |
1811361 |
T |
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| Q |
307 |
cttatgaagtttgtttgaacagctgcagtacaactaattgttccgttatgtagacatcatatttacattattcaacaataagcacatgcactataatgac |
406 |
Q |
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| T |
1811362 |
cttatgaagtttgtttgaacagctgcagtacaactaattgttccgttatgtagacatcatatttacattattcaacaataagcacatgcactataatgac |
1811461 |
T |
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| Q |
407 |
ttttctcaaaaacattaagtatgcatttgaatgaggataagtattacgacaaaagatcgaattgcgaggagagcatatataatttttctgttgaattctt |
506 |
Q |
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| T |
1811462 |
ttttctcaaaaacattaagtatgcatttgaatgaggataagtattacgacaaaagatcgaattgcgaggagagcatatataatttttctgttgaattctt |
1811561 |
T |
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| Q |
507 |
ttcaaaattttagcaaaacttattctctaatctattaatatatctgtgatcacatctaacttctaaggctatttaatcatgatatgctcataaattttga |
606 |
Q |
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| T |
1811562 |
ttcaaaattttagcagaacttattctctaatctattaatatatctgtgatcatatctaacttctaaggctatttaatcatgatatgctcataaattttga |
1811661 |
T |
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| Q |
607 |
aatttaagtgaagatttaactcttctgtccagataggcatcgaggtatctggaaacagaacacagaggacttttgatgatgtgtttcagaaaatggttaa |
706 |
Q |
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| T |
1811662 |
aatttaagtgaagatttaactcttctgtccagataagcatcgaggtatctggaaacagaacacagaggacttttgatgatgtgtttcagaaaatggttga |
1811761 |
T |
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| Q |
707 |
agctgcacaaccgatcccaggatttcgtagagtaaaaggaggtgaagtatttatgtggattttaaattggtatgatttattcatcagacggctagccccg |
806 |
Q |
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| T |
1811762 |
agctgcacaaccgatcccaggatttcgtagagtaaaaggaggtgaagtatttatgtggattttaaattggcatggtttattcatcagattgatagcctta |
1811861 |
T |
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| Q |
807 |
gaaaaggaaaagagaacagaacaagaagtc-agaaactatttacctttttagcataaaatttcttgtacgttagtagatatcatgaaaggtacttggggt |
905 |
Q |
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| T |
1811862 |
gcaaaggaaaag-----agaacaagaagtcaagaaactatttacctttttagcataaaatttcttgtacgttagtagatatcatgaaaggtacttggggt |
1811956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 189
Target Start/End: Complemental strand, 29427520 - 29427476
Alignment:
| Q |
145 |
tggatgagataaagtctgaaaatgggtttataaatgggagacatc |
189 |
Q |
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| T |
29427520 |
tggatgagataaggtctgaaaatgagtttataaatgggagacatc |
29427476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 53 - 116
Target Start/End: Complemental strand, 30588992 - 30588929
Alignment:
| Q |
53 |
cgggtcatgctccagatgtctaatcctaggcgtgaggggtgtgtgttacgagttctacattgga |
116 |
Q |
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| T |
30588992 |
cgggtcacgctccagatgtctagttctaggcgtgaggggtgtgtgttaagagtcccacattgga |
30588929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 181
Target Start/End: Original strand, 26778375 - 26778418
Alignment:
| Q |
138 |
tctacattggatgagataaagtctgaaaatgggtttataaatgg |
181 |
Q |
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| T |
26778375 |
tctacattgggtgagataaagcctgaaaatgtgtttataaatgg |
26778418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 121
Target Start/End: Complemental strand, 9602003 - 9601918
Alignment:
| Q |
37 |
ccactatcgggctgcccgggtcatgctccagatgtctaatcctaggcgtgaggggtgtgtgtta-cgagttctacattggatgaga |
121 |
Q |
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| T |
9602003 |
ccactatcgggcaactctggtcacgctccagatttctagtccatggcgtgaggggtgtgtgttatagagtcccacattggatgaga |
9601918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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