View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4637-Insertion-3 (Length: 895)
Name: NF4637-Insertion-3
Description: NF4637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4637-Insertion-3 |
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Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 380 - 766
Target Start/End: Original strand, 4234171 - 4234556
Alignment:
| Q |
380 |
caatggcccccaatatatatattaattttcagttctaacttaattttcttgatttctcatatatagggagatgctggaggtgttgatctaggtagccaag |
479 |
Q |
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| T |
4234171 |
caatggcccccaatatatatattaattttcatttctaacttaattttcttgatttctcatatatagggagatgctggaggtgttgatctaggtagccaag |
4234270 |
T |
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| Q |
480 |
ctgaagctggaggtgtaatcatggtaatcattcttgatttctcatgtactttgttaaatgcttttttcactatattaatcatttgatattttattgtatt |
579 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4234271 |
ctgaagctggaggtgtaatcatggtaatcattcttgatttctcatattctttgttaaatgcttttttcactatattaatcatttgatattttattgtatt |
4234370 |
T |
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| Q |
580 |
tataggatattgttgaaggagtttgttcgaccaaagatgacatcaatgctaatgactcggtggatactcccacaagcaagactttgggaaaaaggcctaa |
679 |
Q |
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| T |
4234371 |
tataggatattgttgaaggagtttgttcgaccaaagatgacatcaatgctaatgactcggtggatactcccacaagcaagactttgggaaaaaggcctaa |
4234470 |
T |
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| Q |
680 |
tgagagtggtgactatgcctgataaggggtgctttgtctgcaacaaataaaattcagaagcttgcccgtatggaataattggattaa |
766 |
Q |
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| T |
4234471 |
tgagagtggtgactatgcctgat-gggggtgctttgtctgcaacaaataaaattcagaagcttgcccgtatggaaaaattgtattaa |
4234556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 233 - 370
Target Start/End: Original strand, 4233988 - 4234126
Alignment:
| Q |
233 |
aagaagatttgttatgcgcaca-atgatgatgaaaagtctctgaagaacgtttctgagcaggtatggtcttgtatttttattatccatatggtgatcaaa |
331 |
Q |
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| T |
4233988 |
aagaagatttgttatgcgcacatatgatgatgaaaagtctctgaagaacgtttctgagcaggtatggtcttgtatttttattatccatatggtgatcaaa |
4234087 |
T |
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| Q |
332 |
atcagttcttatggttctttaatgttcaacctcgggtaa |
370 |
Q |
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| T |
4234088 |
atcagttcttatggttctttaatgttcaacctcgggtaa |
4234126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 87 - 158
Target Start/End: Original strand, 4233848 - 4233913
Alignment:
| Q |
87 |
ggcttcaccagttcccttgcaagctccaccacacgataaagtaaagctaaagcataattcttctgtaatgtg |
158 |
Q |
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| T |
4233848 |
ggcttcaccagttcccttgcaagctccaccacacgataaag------taaagcataattcttctgtaatgtg |
4233913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 10 - 60
Target Start/End: Original strand, 4233797 - 4233847
Alignment:
| Q |
10 |
tcagtcatctgcgtcaaagaagatttgtgttgtaagcaacttgttgataat |
60 |
Q |
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| T |
4233797 |
tcagtcatctgcatcaaagaagatttgtgttgtaagcaacttgttgataat |
4233847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 832 - 881
Target Start/End: Original strand, 4234624 - 4234673
Alignment:
| Q |
832 |
tgtcgtattgaactcagttttactatgctttattgcaatgtgaaacatta |
881 |
Q |
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| T |
4234624 |
tgtcgtattgaactgagttttactatgctttattgcgatgtgaaacatta |
4234673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 372 - 766
Target Start/End: Complemental strand, 36513680 - 36513282
Alignment:
| Q |
372 |
atatcaaccaatggcccccaatatatatattaattttcagttctaacttaattttcttgatttctcatatatagggagatgctggaggtgttgatctagg |
471 |
Q |
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| T |
36513680 |
atatcaaccaatggcccccaatatatatattaattttcagttctaacttaattttcttgatttctcatatatagggagatgctggaggtgttgatctagg |
36513581 |
T |
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| Q |
472 |
tagccaagctgaagctggaggtgtaatcatggtaatcattcttgatttctcatgtactttgttaaatgcttttttcactatattaatcatttgatatttt |
571 |
Q |
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| T |
36513580 |
tagccaagctgaagctggaggtgtaatcatggtaatcattcttgatttctcatatactttgttaaatgcttttttcactatattaatcatttgatatttt |
36513481 |
T |
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| Q |
572 |
attgtatttataggatattgttgaaggagtttgttcgaccaaagatgacatcaatgctaatgactcggtggat------actcccacaagcaagactttg |
665 |
Q |
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| T |
36513480 |
attgtatttataggatattgttgaaggagtttgttcgaccaaagatgacatcaatgctaatgactcggtggatactcatactcccacaagcaagactttg |
36513381 |
T |
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| Q |
666 |
ggaaaaaggcctaatgagagtggtgactatgcctgataaggggtgctttgtctgcaacaaataaaattcagaagcttgcccgtatggaataattggatta |
765 |
Q |
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| T |
36513380 |
ggaaaaaggcctaatgagagtggtgactatg-ctgat-gggggtggtttgtctgcaacaaataaaattcagaagcttgccagtatggaaaaattggatta |
36513283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 278 - 370
Target Start/End: Complemental strand, 36513824 - 36513728
Alignment:
| Q |
278 |
aacgtttctgagcaggtatggtcttgtatttttattatccatatggt-----gatcaaaatcagttcttatggttctttaatgttcaacctcgggtaa |
370 |
Q |
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| T |
36513824 |
aacgtttctga-caggtatggtcttgtatttttattatccatatggtacgttgatcaaaatcagttcttatggttctttaatgttcaacctcgggtaa |
36513728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 233 - 279
Target Start/End: Complemental strand, 36513905 - 36513859
Alignment:
| Q |
233 |
aagaagatttgttatgcgcacaatgatgatgaaaagtctctgaagaa |
279 |
Q |
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| T |
36513905 |
aagaagatttgttatgcgcacaatgatgatgaaaagtctctgaagaa |
36513859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 845 - 881
Target Start/End: Complemental strand, 36513163 - 36513127
Alignment:
| Q |
845 |
tcagttttactatgctttattgcaatgtgaaacatta |
881 |
Q |
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| T |
36513163 |
tcagttttactatgctttattgcgatgtgaaacatta |
36513127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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