View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4637-Insertion-4 (Length: 700)

Name: NF4637-Insertion-4
Description: NF4637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4637-Insertion-4
NF4637-Insertion-4
[»] chr5 (2 HSPs)
chr5 (7-700)||(808929-809622)
chr5 (22-98)||(39242563-39242640)


Alignment Details
Target: chr5 (Bit Score: 623; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 623; E-Value: 0
Query Start/End: Original strand, 7 - 700
Target Start/End: Original strand, 808929 - 809622
Alignment:
Q  7 aaattgatgataatgtatcattgtacctattttagttgttttcctgtgttccagaatagaagttgatttacatgtataatgtttgtaatataaatgtaat 106  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  808929 aaattgataataatgtatcattgtacctattttagttgttttcctgtgttccagaatagaagttgatttacatgtataatgtttgtaatataaatgtaat 809028  T
Q  107 aatacatagaagactttatttctaaagctaccactgcgtctgtgtatctctgatgtttaaatttccttatgtactagttgttttatttgttgacccacta 206  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  809029 aatacatagaagactttatttctatagctaccaccgcgtctgtgtatctctgatgtttaaatttccttatgtactagttggtttatttgttgacccacta 809128  T
Q  207 acactgcccctcagttgcaggaaaaataatctcaggaagatatatgtgcaaaagagggaggaaacttaatatgtgttagaagaaagagaggtgagaaaat 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  809129 acactgcccctcagttgcaggaaaaataatctcaggaagatatatgtgcaaaagagggaggaaacttaatatgtgttagaagaaagagaggtgagaaaat 809228  T
Q  307 ggcagacctattgcagtgtatttatctcactctccctctgcagtgtcctcccctctgctgcaatttatctggtatcctctgtttttattattgctttgct 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  809229 ggcagacctattgcagtgtatttatctcactctccctctgcagtgtcctcccctctgctgcaatttttctggtatcctctgtttttattattgctttgct 809328  T
Q  407 ttccttaaaatggagtgactccatatttaccttttgggcatttgcatttgatttttgtacttgcaaattgcaatgaagctcttcaactgtgctattgaaa 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  809329 ttccttaaaatggagtgactccatatttaccttttgggcatttgcatttgatttttgtacttgcaaattgcaatgaagctcttcaactgtgctattgaaa 809428  T
Q  507 aggtcaatattagagttgatttcagtattgttatttgttatatgctttaggatatttctgagtatagattcatcaaacatttttatcttatgctttgttg 606  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  809429 aggtcaatattagagttgatttcagtattgttaattgttatatgctttaggatatttctgagtatagattcatctaacatttttatcttatgctttgttg 809528  T
Q  607 ttagctgtttattgagttcag-nnnnnnnnactcaagaatcaagctttgaaggaccttattttcctttagtctgacgaatattgtatagtataat 700  Q
    ||||||| |||||||||||||         |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  809529 ttagctg-ttattgagttcagtttttttttactcaagaatcaagctttgaaggaccttattttccttttgtctgacgaatattgtatagtataat 809622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 22 - 98
Target Start/End: Original strand, 39242563 - 39242640
Alignment:
Q  22 tatcattgtacctattttagttgttttcctgtgttccag-aatagaagttgatttacatgtataatgtttgtaatata 98  Q
    ||||||||||||  |||| ||||||||| |||||| ||| || | ||||||||||||||||||||||| |||||||||    
T  39242563 tatcattgtaccactttttgttgttttcttgtgtttcagcaacacaagttgatttacatgtataatgtctgtaatata 39242640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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