View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4637-Insertion-5 (Length: 526)

Name: NF4637-Insertion-5
Description: NF4637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4637-Insertion-5
NF4637-Insertion-5
[»] chr8 (5 HSPs)
chr8 (7-492)||(35984508-35984991)
chr8 (7-494)||(31906261-31906746)
chr8 (11-127)||(12590307-12590423)
chr8 (278-346)||(29272599-29272667)
chr8 (275-344)||(16450253-16450322)
[»] chr2 (5 HSPs)
chr2 (278-469)||(3280891-3281080)
chr2 (172-212)||(3281140-3281180)
chr2 (429-469)||(17662503-17662543)
chr2 (429-469)||(17713529-17713569)
chr2 (75-139)||(17991758-17991822)
[»] chr6 (61 HSPs)
chr6 (11-377)||(29827308-29827677)
chr6 (278-398)||(28240658-28240774)
chr6 (278-368)||(27717260-27717350)
chr6 (280-480)||(28326699-28326897)
chr6 (280-480)||(28504335-28504533)
chr6 (278-408)||(29842753-29842883)
chr6 (278-401)||(28140833-28140956)
chr6 (280-469)||(28296503-28296690)
chr6 (280-469)||(28515383-28515570)
chr6 (278-368)||(31285890-31285980)
chr6 (280-480)||(28244016-28244214)
chr6 (280-479)||(28186616-28186813)
chr6 (11-131)||(29469774-29469894)
chr6 (11-127)||(29673509-29673625)
chr6 (278-377)||(26885389-26885488)
chr6 (278-368)||(27609881-27609971)
chr6 (278-368)||(27697347-27697437)
chr6 (278-368)||(27705015-27705105)
chr6 (278-379)||(26862900-26863001)
chr6 (278-379)||(27426373-27426474)
chr6 (16-139)||(28096948-28097071)
chr6 (42-238)||(2186281-2186474)
chr6 (278-368)||(26624602-26624692)
chr6 (278-368)||(26730579-26730669)
chr6 (280-368)||(27680281-27680369)
chr6 (278-377)||(26647801-26647900)
chr6 (278-377)||(26753769-26753868)
chr6 (278-377)||(26803768-26803867)
chr6 (278-377)||(28787560-28787659)
chr6 (278-377)||(28793681-28793780)
chr6 (278-368)||(27530065-27530155)
chr6 (61-205)||(29842533-29842686)
chr6 (278-378)||(27215773-27215873)
chr6 (7-139)||(27680522-27680654)
chr6 (278-377)||(28097204-28097303)
chr6 (25-139)||(26960685-26960799)
chr6 (278-368)||(27603465-27603555)
chr6 (25-139)||(28141098-28141212)
chr6 (26-228)||(28150646-28150848)
chr6 (275-353)||(28182455-28182533)
chr6 (278-378)||(25484380-25484480)
chr6 (278-378)||(25512212-25512312)
chr6 (278-378)||(26057243-26057343)
chr6 (278-378)||(26077213-26077313)
chr6 (278-378)||(26144189-26144289)
chr6 (277-377)||(26657284-26657384)
chr6 (161-213)||(26657442-26657494)
chr6 (277-377)||(26763255-26763355)
chr6 (161-213)||(26763413-26763465)
chr6 (161-233)||(26938489-26938561)
chr6 (275-362)||(25492077-25492164)
chr6 (278-353)||(26825165-26825240)
chr6 (319-358)||(26951084-26951123)
chr6 (310-353)||(26978726-26978769)
chr6 (25-139)||(28327041-28327155)
chr6 (25-139)||(28504677-28504791)
chr6 (161-250)||(26885510-26885599)
chr6 (412-481)||(27664107-27664176)
chr6 (11-139)||(26863131-26863259)
chr6 (310-358)||(27664007-27664055)
chr6 (11-47)||(29758946-29758982)
[»] scaffold0038 (2 HSPs)
scaffold0038 (278-398)||(40820-40936)
scaffold0038 (280-480)||(44178-44376)
[»] scaffold0349 (1 HSPs)
scaffold0349 (278-368)||(2300-2390)
[»] chr1 (8 HSPs)
chr1 (11-139)||(26137442-26137570)
chr1 (13-130)||(5921971-5922088)
chr1 (278-377)||(28132262-28132361)
chr1 (278-368)||(267101-267191)
chr1 (292-377)||(28126450-28126535)
chr1 (278-338)||(5922230-5922290)
chr1 (169-255)||(28126333-28126419)
chr1 (161-213)||(28132151-28132203)
[»] scaffold0019 (1 HSPs)
scaffold0019 (275-479)||(57052-57254)
[»] scaffold0419 (1 HSPs)
scaffold0419 (278-377)||(8809-8908)
[»] scaffold0003 (1 HSPs)
scaffold0003 (278-379)||(60889-60990)
[»] chr4 (9 HSPs)
chr4 (278-379)||(18075081-18075182)
chr4 (277-358)||(18654233-18654314)
chr4 (278-378)||(5089711-5089811)
chr4 (275-358)||(18688380-18688463)
chr4 (275-358)||(18698154-18698237)
chr4 (275-358)||(18730258-18730341)
chr4 (275-358)||(18678314-18678397)
chr4 (275-358)||(18722839-18722922)
chr4 (162-228)||(5089601-5089667)
[»] chr3 (1 HSPs)
chr3 (10-127)||(615362-615479)
[»] scaffold1870 (1 HSPs)
scaffold1870 (278-377)||(91-190)
[»] scaffold0277 (2 HSPs)
scaffold0277 (278-377)||(3473-3572)
scaffold0277 (278-377)||(12436-12535)
[»] chr5 (2 HSPs)
chr5 (278-344)||(16692222-16692288)
chr5 (161-228)||(16692332-16692399)
[»] scaffold0012 (2 HSPs)
scaffold0012 (11-49)||(238364-238402)
scaffold0012 (278-327)||(238626-238675)


Alignment Details
Target: chr8 (Bit Score: 459; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 7 - 492
Target Start/End: Complemental strand, 35984991 - 35984508
Alignment:
Q  7 atcatactcactgtattctcttctaaaacttgaattatatcttcatgagatcataaccgactacgctttccaggttcttccggtgattccagtcgaacaa 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  35984991 atcatactcactgtattctcttctaaaacttgaattatatcttcatgagaccataaccgactacgctttccaggttcttctggtgattccagtcgaacaa 35984892  T
Q  107 tttccttacccatgtcctctatcaaggcatgtagagtcaatttactatgcgaactaatctgtatgagagatttttcaaccaatactccaatatgatattt 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  35984891 tttccttacccatgtcctctatcaaggcatgtagagtcaatttactatgcgaactaatctttatgagagatttttcaaccaatactccaatatgatattt 35984792  T
Q  207 catgcaagcatcataatgagcatgaagcatattttctacatctgccaatgtatcatttgttcctccgtagaaacaagcaatgtcaagaaaaacactttgc 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35984791 catgcaagcatcataatgagcatgaagcatattttctacatctgccaatttatcatttgttcctccgtagaaacaagcaatgtcaagaaaaacactttgc 35984692  T
Q  307 tcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctttattaggaatggtttcataccggtgtaatgcagattcccactcttgta 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  35984691 tcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctttattaggaatggtttcataccggtgtaatgcagattcccactcttg-- 35984594  T
Q  407 tactgtctttccaaataaattggaacctattactatcaaagccaatggaagtccagaagcatatgctactgcacgcttcaagacat 492  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35984593 tactgtctttccaaataaattggaacctattactatcaaagccaatggaagtccagaagcatatgctactgcacgcttcaagacat 35984508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 7 - 494
Target Start/End: Complemental strand, 31906746 - 31906261
Alignment:
Q  7 atcatactcactgtattctcttctaaaacttgaattatatcttcatgagatcataaccgactacgctttccaggttcttccggtgattccagtcgaacaa 106  Q
    ||||||||||||| ||| |||||||||||||||||||||||||| ||| | ||||| |||||||| ||||||||||| || |||||||||| || |||||    
T  31906746 atcatactcactgaattgtcttctaaaacttgaattatatcttcgtgaaaccataatcgactacgttttccaggttcgtctggtgattccaatctaacaa 31906647  T
Q  107 tttccttacccatgtcctctatcaaggcatgtagagtcaatttactatgcgaactaatctgtatgagagatttttcaaccaatactccaatatgatattt 206  Q
    |||| ||| |||||||| | |||||| |||||| | |  | ||||    | ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  31906646 tttctttagccatgtccccaatcaagtcatgtacaatgtacttacctgtccaactaatctttatgagagatttttcaaccaatactccaatatgatattt 31906547  T
Q  207 catgcaagcatcataatgagcatgaagcatattttctacatctgccaatgtatcatttgttcctccgtagaaacaagcaatgtcaagaaaaacactttgc 306  Q
    ||||||||||||| ||||||||| |||||||||||| | || |||||||  ||  | | |||||  ||||| |||||| ||||||||||||||||||| |    
T  31906546 catgcaagcatcaaaatgagcataaagcatattttccatatttgccaattgatactcttttcctatgtagatacaagccatgtcaagaaaaacacttttc 31906447  T
Q  307 tcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctttattaggaatggtttcataccggtgtaatgcagattcccactcttgta 406  Q
    ||||||||||| |||||||||||||||||||| ||||| |||||||| |||||||| |||||| ||||||| || ||||||||||||||||| |||||||    
T  31906446 tcatcttcctccaaagcatcaaaacttactttgagtatattttggatctctttatttggaatgatttcatatcgatgtaatgcagattcccattcttgta 31906347  T
Q  407 tactgtctttccaaataaattggaacctattactatcaaagccaatggaagtccagaagcatatgctactgcacgcttcaagacatca 494  Q
    ||   |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  31906346 ta--ttctttccaaataaattggaaccaataactatcaaagccaatggaagtccagaagcataacctactgcacgcttcaagacatca 31906261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 11 - 127
Target Start/End: Complemental strand, 12590423 - 12590307
Alignment:
Q  11 tactcactgtattctcttctaaaacttgaattatatcttcatgagatcataaccgactacgctttccaggttcttccggtgattccagtcgaacaatttc 110  Q
    ||||||| ||||| ||||||||||||||||||| ||||| |   || ||||||| |||||| |||||||| | ||||||||||||  ||| ||| |||||    
T  12590423 tactcacagtattttcttctaaaacttgaattaaatctttagaggaccataacctactacgttttccaggattttccggtgattcttgtctaactatttc 12590324  T
Q  111 cttacccatgtcctcta 127  Q
     || ||||| |||||||    
T  12590323 tttccccatatcctcta 12590307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 278 - 346
Target Start/End: Original strand, 29272599 - 29272667
Alignment:
Q  278 aacaagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatct 346  Q
    ||||||||||||| ||||| |||||||| |  ||||| || ||||||||| ||||||||||||||||||    
T  29272599 aacaagcaatgtccagaaagacactttgttgctcttcttccaaagcatcataacttactttaagtatct 29272667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 344
Target Start/End: Complemental strand, 16450322 - 16450253
Alignment:
Q  275 agaaacaagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtat 344  Q
    ||||||||||||||||||||||||||||   ||||||||| || || | |||| | || |||||||||||    
T  16450322 agaaacaagcaatgtcaagaaaaacactcctctcatcttcatccaaggaatcatagctgactttaagtat 16450253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 1e-30; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 278 - 469
Target Start/End: Complemental strand, 3281080 - 3280891
Alignment:
Q  278 aacaagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctttattaggaatggtttcata 377  Q
    ||||||||||||| ||||||||||||||||| |||||||| |||||||||||||| |||||||||||||| || || ||||||||||||||  |||||||    
T  3281080 aacaagcaatgtcgagaaaaacactttgctcgtcttcctccaaagcatcaaaactcactttaagtatcttctgaatctctttattaggaatcctttcata 3280981  T
Q  378 ccggtgtaatgcagattcccactcttgtatactgtctttccaaataaattggaacctattactatcaaagccaatggaagtccagaagcata 469  Q
     || |  ||   ||| | |||||||| ||||   |||||||||| || |||||||||| ||||   || ||||||||||| |||||||||||    
T  3280980 tcgatccaacaaagaattccactcttttata--ttctttccaaacaagttggaacctaatacttctaatgccaatggaaggccagaagcata 3280891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 172 - 212
Target Start/End: Complemental strand, 3281180 - 3281140
Alignment:
Q  172 agagatttttcaaccaatactccaatatgatatttcatgca 212  Q
    |||| ||||| |||||| |||||||||||||||||||||||    
T  3281180 agagtttttttaaccaaaactccaatatgatatttcatgca 3281140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 429 - 469
Target Start/End: Complemental strand, 17662543 - 17662503
Alignment:
Q  429 gaacctattactatcaaagccaatggaagtccagaagcata 469  Q
    ||||||||||||  ||||||||||||||| |||||||||||    
T  17662543 gaacctattacttccaaagccaatggaaggccagaagcata 17662503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 429 - 469
Target Start/End: Complemental strand, 17713569 - 17713529
Alignment:
Q  429 gaacctattactatcaaagccaatggaagtccagaagcata 469  Q
    ||||||||||||  ||||||||||||||| |||||||||||    
T  17713569 gaacctattacttccaaagccaatggaaggccagaagcata 17713529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 75 - 139
Target Start/End: Original strand, 17991758 - 17991822
Alignment:
Q  75 tccaggttcttccggtgattccagtcgaacaatttccttacccatgtcctctatcaaggcatgta 139  Q
    |||||| ||||  ||||||||  | ||||| ||||| ||||||||||||||||||||| ||||||    
T  17991758 tccaggctctttaggtgattcttgccgaacgatttctttacccatgtcctctatcaagtcatgta 17991822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 1e-27; HSPs: 61)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 11 - 377
Target Start/End: Complemental strand, 29827677 - 29827308
Alignment:
Q  11 tactcactgtattctcttctaaaacttgaattatatcttcatgagatcataaccgactacgctttccaggttcttccggtgattccagtcgaacaatttc 110  Q
    ||||||| | ||| |||||||| ||||||| |||||||||||   | || |||| ||||||||||||||| |||| |||||||||  |||| ||||||||    
T  29827677 tactcaccgaattttcttctaagacttgaactatatcttcatagaaccacaacctactacgctttccaggctctttcggtgattcttgtcgtacaatttc 29827578  T
Q  111 cttacccatgtcctctatcaaggcatgtagagtcaatttactatgcgaac---------taatctgtatgagagatttttcaaccaatactccaatatga 201  Q
     ||||||||||| ||||||||| ||||||  ||||    |  || || ||         ||||||||||||||| |||||| ||||| ||||||||||||    
T  29827577 tttacccatgtcttctatcaagtcatgtaatgtcacaacagcatccgtacccaaatgaataatctgtatgagagttttttcgaccaacactccaatatga 29827478  T
Q  202 tatttcatgcaagcatcataatgagcatgaagcatattttctacatctgccaatgtatcatttgttcctccgtagaaacaagcaatgtcaagaaaaacac 301  Q
    ||||  ||||    | ||| |||||||  ||| |||| ||  || ||| ||||   |||||     |||  | || ||||||||||||| ||||||||||    
T  29827477 tattctatgctttgaccatgatgagcacaaagaatatctttgacctctcccaa---atcat---accctttgaagcaacaagcaatgtcgagaaaaacac 29827384  T
Q  302 tttgctcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctttattaggaatggtttcata 377  Q
     ||| ||||||||||| |||||||||||||||| ||||||||| |||||||| ||||||||||||||  |||||||    
T  29827383 cttgttcatcttcctccaaagcatcaaaacttattttaagtatattttggatctctttattaggaatcctttcata 29827308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 278 - 398
Target Start/End: Complemental strand, 28240774 - 28240658
Alignment:
Q  278 aacaagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctttattaggaatggtttcata 377  Q
    ||||||||||||| |||||||||||||||||||||| ||| |||||||||||    |||||||||||||||||||| |||||||| |||||  |||||||    
T  28240774 aacaagcaatgtcgagaaaaacactttgctcatctttctccaaagcatcaaa----actttaagtatcttttggatctctttatttggaatcctttcata 28240679  T
Q  378 ccggtgtaatgcagattccca 398  Q
    | ||| |||||  ||||||||    
T  28240678 ctggtctaatgtggattccca 28240658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 278 - 368
Target Start/End: Original strand, 27717260 - 27717350
Alignment:
Q  278 aacaagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctttattaggaat 368  Q
    ||||||||||||| ||||| ||||||||||  |||||||| ||||||||| ||||||||||||||||||||||||| |||||||| |||||    
T  27717260 aacaagcaatgtctagaaagacactttgctgctcttcctccaaagcatcataacttactttaagtatcttttggatctctttattgggaat 27717350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 280 - 480
Target Start/End: Complemental strand, 28326897 - 28326699
Alignment:
Q  280 caagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctttattaggaatggtttcatacc 379  Q
    ||||||||||| ||||||||| | ||||||||||| || ||||||||||| |||||||||||||||  |||||| | |||| | |||||  ||||||||     
T  28326897 caagcaatgtcgagaaaaacattctgctcatcttcatccaaagcatcaaagcttactttaagtatcgcttggatctttttaatgggaatcctttcatact 28326798  T
Q  380 ggtgtaatgcagattcccactcttgtatactgtctttccaaataaattggaacctattactatcaaagccaatggaagtccagaagcatatgctactgca 479  Q
    | | |||||||||||  || |||  ||||   |||||||||| || |||||||| | ||||   |||||||||||||| ||||||||||| | |||||||    
T  28326797 gatataatgcagatttacattctactata--ttctttccaaacaagttggaacccactacttctaaagccaatggaaggccagaagcataagttactgca 28326700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 280 - 480
Target Start/End: Complemental strand, 28504533 - 28504335
Alignment:
Q  280 caagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctttattaggaatggtttcatacc 379  Q
    ||||||||||| ||||||||| | ||||||||||| || ||||||||||| |||||||||||||||  |||||| | |||| | |||||  ||||||||     
T  28504533 caagcaatgtcgagaaaaacattctgctcatcttcatccaaagcatcaaagcttactttaagtatcgcttggatctttttaatgggaatcctttcatact 28504434  T
Q  380 ggtgtaatgcagattcccactcttgtatactgtctttccaaataaattggaacctattactatcaaagccaatggaagtccagaagcatatgctactgca 479  Q
    | | |||||||||||  || |||  ||||   |||||||||| || |||||||| | ||||   |||||||||||||| ||||||||||| | |||||||    
T  28504433 gatataatgcagatttacattctactata--ttctttccaaacaagttggaacccactacttctaaagccaatggaaggccagaagcataagttactgca 28504336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 278 - 408
Target Start/End: Original strand, 29842753 - 29842883
Alignment:
Q  278 aacaagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctttattaggaatggtttcata 377  Q
    ||||||||||||| |||||||||| ||| || |||||||| ||||||||||| |||| ||||||||| || ||||| ||||||||||||||  |||||||    
T  29842753 aacaagcaatgtcgagaaaaacaccttgttcgtcttcctccaaagcatcaaagcttattttaagtatattgtggatctctttattaggaatcctttcata 29842852  T
Q  378 ccggtgtaatgcagattcccactcttgtata 408  Q
    ||  | ||||| ||||| ||| |||| ||||    
T  29842853 cctatctaatgtagatttccattcttctata 29842883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 278 - 401
Target Start/End: Complemental strand, 28140956 - 28140833
Alignment:
Q  278 aacaagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctttattaggaatggtttcata 377  Q
    ||||||||||||| |||||||||||||||||||||| ||| |||  |||||| || ||||||||||||||  |||  ||||||| ||||||  |||||||    
T  28140956 aacaagcaatgtcgagaaaaacactttgctcatctttctccaaactatcaaagctcactttaagtatcttcaggacctctttatgaggaatcctttcata 28140857  T
Q  378 ccggtgtaatgcagattcccactc 401  Q
    ||| | ||||| ||||| ||||||    
T  28140856 ccgatctaatgtagatttccactc 28140833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 280 - 469
Target Start/End: Original strand, 28296503 - 28296690
Alignment:
Q  280 caagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctttattaggaatggtttcatacc 379  Q
    ||||| ||||||||||||||| ||| |||||||||||| ||||||||||| |||||||||||||||| |||||| | | || | ||  |  ||||||||     
T  28296503 caagcgatgtcaagaaaaacatttttctcatcttcctccaaagcatcaaagcttactttaagtatctcttggatctttctaatgggtctcctttcatact 28296602  T
Q  380 ggtgtaatgcagattcccactcttgtatactgtctttccaaataaattggaacctattactatcaaagccaatggaagtccagaagcata 469  Q
    |   ||||||||||| ||| |||  ||||   |||||||||| || |||||||| | ||||   |||||||||||||| |||||||||||    
T  28296603 gacttaatgcagatttccattctcttata--ttctttccaaacaagttggaacccactacttctaaagccaatggaaggccagaagcata 28296690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 280 - 469
Target Start/End: Complemental strand, 28515570 - 28515383
Alignment:
Q  280 caagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctttattaggaatggtttcatacc 379  Q
    ||||| ||||||||||||||| ||| |||||||||||| ||||||||||| |||||||||||||||| |||||| | | || | ||  |  ||||||||     
T  28515570 caagcgatgtcaagaaaaacatttttctcatcttcctccaaagcatcaaagcttactttaagtatctcttggatctttctaatgggtctcctttcatact 28515471  T
Q  380 ggtgtaatgcagattcccactcttgtatactgtctttccaaataaattggaacctattactatcaaagccaatggaagtccagaagcata 469  Q
    |   ||||||||||| ||| |||  ||||   |||||||||| || |||||||| | ||||   |||||||||||||| |||||||||||    
T  28515470 gacttaatgcagatttccattctcttata--ttctttccaaacaagttggaacccactacttctaaagccaatggaaggccagaagcata 28515383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 278 - 368
Target Start/End: Complemental strand, 31285980 - 31285890
Alignment:
Q  278 aacaagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctttattaggaat 368  Q
    ||||||||||||| ||||| ||||| ||||| ||||| || ||||||||| | ||||||||||||||||||||||| |||||||| |||||    
T  31285980 aacaagcaatgtccagaaagacactctgctcctcttcttccaaagcatcatagcttactttaagtatcttttggatctctttattgggaat 31285890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 280 - 480
Target Start/End: Complemental strand, 28244214 - 28244016
Alignment:
Q  280 caagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctttattaggaatggtttcatacc 379  Q
    ||||||||||| ||||||||| | |||||||||| ||| ||||||||||| ||||||||||||||||  || || | |||| | |||||  ||  |||||    
T  28244214 caagcaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctatacc 28244115  T
Q  380 ggtgtaatgcagattcccactcttgtatactgtctttccaaataaattggaacctattactatcaaagccaatggaagtccagaagcatatgctactgca 479  Q
    | | ||||||||||| ||| |||  ||||   | ||||||||||| || ||||| | ||||   |||||||||||||| ||||||||||| | |||||||    
T  28244114 gatctaatgcagatttccattctcctata--ttatttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcataagttactgca 28244017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 280 - 479
Target Start/End: Complemental strand, 28186813 - 28186616
Alignment:
Q  280 caagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctttattaggaatggtttcatacc 379  Q
    ||||| ||||| ||||||||| |||| ||  ||||| | ||||||||||| |||||||| ||||||| |||||| | |||||  |||||  ||||||||     
T  28186813 caagcgatgtcgagaaaaacattttgttctgcttcccccaaagcatcaaagcttactttgagtatctcttggatctttttatcgggaatcctttcatact 28186714  T
Q  380 ggtgtaatgcagattcccactcttgtatactgtctttccaaataaattggaacctattactatcaaagccaatggaagtccagaagcatatgctactgca 479  Q
    | | ||||||||||| ||| |||  ||||   |||||||||| || |||||||| | ||||   |||||||||||||| ||||||||||| | |||||||    
T  28186713 gatttaatgcagatttccattctcctata--ttctttccaaacaagttggaacccactacttctaaagccaatggaaggccagaagcataagttactgca 28186616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 11 - 131
Target Start/End: Complemental strand, 29469894 - 29469774
Alignment:
Q  11 tactcactgtattctcttctaaaacttgaattatatcttcatgagatcataaccgactacgctttccaggttcttccggtgattccagtcgaacaatttc 110  Q
    ||||||| ||||| ||||||||||||||||||||||||| |   || ||||||| ||| || |||||||| ||||| ||||||||  ||| |||||||||    
T  29469894 tactcaccgtattttcttctaaaacttgaattatatctttagaggaccataacctactgcgttttccaggatcttcaggtgattcttgtctaacaatttc 29469795  T
Q  111 cttacccatgtcctctatcaa 131  Q
     || ||||| |||||||||||    
T  29469794 tttccccatatcctctatcaa 29469774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 11 - 127
Target Start/End: Original strand, 29673509 - 29673625
Alignment:
Q  11 tactcactgtattctcttctaaaacttgaattatatcttcatgagatcataaccgactacgctttccaggttcttccggtgattccagtcgaacaatttc 110  Q
    ||||||||||||| ||||||||||||||||||||||||||   | | ||||||| |||||| |||||||| ||||| |||| |||  ||| |||||||||    
T  29673509 tactcactgtattttcttctaaaacttgaattatatcttcggaaaaccataacctactacgttttccaggatcttcaggtgcttcttgtctaacaatttc 29673608  T
Q  111 cttacccatgtcctcta 127  Q
     || ||||| |||||||    
T  29673609 ttttcccatatcctcta 29673625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 278 - 377
Target Start/End: Complemental strand, 26885488 - 26885389
Alignment:
Q  278 aacaagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctttattaggaatggtttcata 377  Q
    ||||||| || || ||||| ||||||||||| |||||||||||||||||| | |||||||||||||||| |||||| | | ||||||||||  |||||||    
T  26885488 aacaagctatatccagaaagacactttgctcctcttcctctaaagcatcatagcttactttaagtatctcttggatctttgtattaggaatcttttcata 26885389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 278 - 368
Target Start/End: Original strand, 27609881 - 27609971
Alignment:
Q  278 aacaagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctttattaggaat 368  Q
    ||||||||||||| ||||| ||||||||||| ||||| || |||| |||| | || |||||||||||||||||||| |||||||| |||||    
T  27609881 aacaagcaatgtccagaaagacactttgctcctcttcttccaaagaatcatagctcactttaagtatcttttggatctctttattgggaat 27609971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 278 - 368
Target Start/End: Original strand, 27697347 - 27697437
Alignment:
Q  278 aacaagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctttattaggaat 368  Q
    ||||||||||||| ||||| ||||||||||| ||||| || ||||||||| | || ||| |||||||||||||||| |||||||| |||||    
T  27697347 aacaagcaatgtccagaaagacactttgctcctcttcttccaaagcatcatagctcactctaagtatcttttggatctctttattgggaat 27697437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 278 - 368
Target Start/End: Original strand, 27705015 - 27705105
Alignment:
Q  278 aacaagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctttattaggaat 368  Q
    ||||||||||||||||||| ||||| ||||| ||||| || ||||||||| | || ||| |||||||||||||||| |||||||| |||||    
T  27705015 aacaagcaatgtcaagaaagacactctgctcctcttcttccaaagcatcatagctcactctaagtatcttttggatctctttattgggaat 27705105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 278 - 379
Target Start/End: Complemental strand, 26863001 - 26862900
Alignment:
Q  278 aacaagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctttattaggaatggtttcata 377  Q
    |||||||||| || ||||| ||||||||||  ||||| || ||||||||| | ||||||||||||||| ||||||| |||||||| |||||  |||||||    
T  26863001 aacaagcaatatctagaaagacactttgctgctcttcttccaaagcatcatagcttactttaagtatcctttggatctctttattgggaatcttttcata 26862902  T
Q  378 cc 379  Q
    ||    
T  26862901 cc 26862900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 278 - 379
Target Start/End: Original strand, 27426373 - 27426474
Alignment:
Q  278 aacaagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctttattaggaatggtttcata 377  Q
    ||||||||||||| ||||| ||||||||||| |||||||| |||| |||| | || |||||||||||  ||||||| |||||||| |||||  |||||||    
T  27426373 aacaagcaatgtctagaaagacactttgctcctcttcctccaaagaatcatagctcactttaagtattctttggatctctttattgggaatcttttcata 27426472  T
Q  378 cc 379  Q
    ||    
T  27426473 cc 27426474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 16 - 139
Target Start/End: Original strand, 28096948 - 28097071
Alignment:
Q  16 actgtattctcttctaaaacttgaattatatcttcatgagatcataaccgactacgctttccaggttcttccggtgattccagtcgaacaatttccttac 115  Q
    |||| ||| |||||||||||||||| ||||||||||||  |  | ||||  ||||| |||||||||||||  ||||||||  |||  |||||||| ||||    
T  28096948 actgaattttcttctaaaacttgaaatatatcttcatggaacgacaacctgctacgttttccaggttcttttggtgattcttgtcttacaatttctttac 28097047  T
Q  116 ccatgtcctctatcaaggcatgta 139  Q
    ||||||| ||||||||| ||||||    
T  28097048 ccatgtcttctatcaagtcatgta 28097071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 42 - 238
Target Start/End: Complemental strand, 2186474 - 2186281
Alignment:
Q  42 tatatcttcatgagatcataaccgactacgctttccaggttcttccggtgattccagtcgaacaatttccttacccatgtcctctatcaaggcatgtaga 141  Q
    |||||||||||| || || |||| |||||| |||||||| ||||  ||||||||  |||| || ||||| |||||||| |||||||||||| ||||||      
T  2186474 tatatcttcatgggaccacaacctactacgttttccaggctcttttggtgattcttgtcgtacgatttctttacccatttcctctatcaagtcatgtaat 2186375  T
Q  142 gtcaatttactatgcgaactaatctgtatgagagatttttcaaccaatactccaatatgatatttcatgcaagcatcataatgagcatgaagcatat 238  Q
    ||||    || |  |  | |||||| |||||| |||||||||||||| ||||||||||||| ||| ||||||  |  ||||||||||| ||| ||||    
T  2186374 gtca---cacaacccccaataatctttatgagtgatttttcaaccaacactccaatatgatttttgatgcaataagtataatgagcatcaagtatat 2186281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 278 - 368
Target Start/End: Complemental strand, 26624692 - 26624602
Alignment:
Q  278 aacaagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctttattaggaat 368  Q
    |||||||||| || ||||| ||||| ||||| ||||| || ||||||||| | || |||||||||||||||||||| |||||||| |||||    
T  26624692 aacaagcaatatctagaaagacactctgctcctcttcttccaaagcatcatagctcactttaagtatcttttggatctctttattgggaat 26624602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 278 - 368
Target Start/End: Complemental strand, 26730669 - 26730579
Alignment:
Q  278 aacaagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctttattaggaat 368  Q
    |||||||||| || ||||| ||||| ||||| ||||| || ||||||||| | || |||||||||||||||||||| |||||||| |||||    
T  26730669 aacaagcaatatctagaaagacactctgctcctcttcttccaaagcatcatagctcactttaagtatcttttggatctctttattgggaat 26730579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 280 - 368
Target Start/End: Complemental strand, 27680369 - 27680281
Alignment:
Q  280 caagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctttattaggaat 368  Q
    ||||| ||||||||||| ||||| ||||| ||||| || ||||||||| | || || ||||||||||||||||| |||||||| |||||    
T  27680369 caagcgatgtcaagaaagacactctgctcctcttcttccaaagcatcatagctcaccttaagtatcttttggatctctttattgggaat 27680281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 377
Target Start/End: Complemental strand, 26647900 - 26647801
Alignment:
Q  278 aacaagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctttattaggaatggtttcata 377  Q
    ||||||||||||| ||||| ||||| ||||  |||||||| ||||||||| | ||||||||||||||||  ||||| | |||||| |||||  |||||||    
T  26647900 aacaagcaatgtctagaaagacactctgctgctcttcctccaaagcatcatagcttactttaagtatctcgtggatctttttattgggaatcttttcata 26647801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 377
Target Start/End: Complemental strand, 26753868 - 26753769
Alignment:
Q  278 aacaagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctttattaggaatggtttcata 377  Q
    ||||||||||||| ||||| ||||| ||||  |||||||| ||||||||| | ||||||||||||||||  ||||| | |||||| |||||  |||||||    
T  26753868 aacaagcaatgtctagaaagacactctgctgctcttcctccaaagcatcatagcttactttaagtatctcgtggatctttttattgggaatcttttcata 26753769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 377
Target Start/End: Complemental strand, 26803867 - 26803768
Alignment:
Q  278 aacaagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctttattaggaatggtttcata 377  Q
    ||||||||||||| ||||| ||||| ||||  |||||||| ||||||||| | ||||||||||||||||  ||||| | |||||| |||||  |||||||    
T  26803867 aacaagcaatgtctagaaagacactctgctgctcttcctccaaagcatcatagcttactttaagtatctcgtggatctttttattgggaatcttttcata 26803768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 377
Target Start/End: Complemental strand, 28787659 - 28787560
Alignment:
Q  278 aacaagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctttattaggaatggtttcata 377  Q
    |||| |||||||| |||||||||||||| |  |||||||| ||||||||| | ||||||||||||||||  ||||| | |||||| |||||  |||||||    
T  28787659 aacatgcaatgtctagaaaaacactttgttgctcttcctccaaagcatcatagcttactttaagtatctcgtggatctttttattgggaatcttttcata 28787560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 377
Target Start/End: Complemental strand, 28793780 - 28793681
Alignment:
Q  278 aacaagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctttattaggaatggtttcata 377  Q
    |||| |||||||| |||||||||||||| |  |||||||| ||||||||| | ||||||||||||||||  ||||| | |||||| |||||  |||||||    
T  28793780 aacatgcaatgtctagaaaaacactttgttgctcttcctccaaagcatcatagcttactttaagtatctcgtggatctttttattgggaatcttttcata 28793681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 278 - 368
Target Start/End: Original strand, 27530065 - 27530155
Alignment:
Q  278 aacaagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctttattaggaat 368  Q
    ||||||||||||| ||||| ||||||||||| |||| ||| |||| |||| | || |||||||||||  ||||||| |||||||| |||||    
T  27530065 aacaagcaatgtctagaaagacactttgctcttctttctccaaagaatcatagctcactttaagtattctttggatctctttattgggaat 27530155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 61 - 205
Target Start/End: Original strand, 29842533 - 29842686
Alignment:
Q  61 aaccgactacgctttccaggttcttccggtgattccagtcgaacaatttccttacccatgtcctctatcaaggcatgtagagtcaatttactatgcgaac 160  Q
    |||| |||| |||||||||| |||| || ||||||  |||| |||||||| ||||||||||| ||||||||| ||||||| ||||   ||  ||||||||    
T  29842533 aacctactatgctttccaggctctttcgttgattctggtcgtacaatttctttacccatgtcttctatcaagtcatgtagtgtcacaatagcatgcgaac 29842632  T
Q  161 ---------taatctgtatgagagatttttcaaccaatactccaatatgatatt 205  Q
             |||||| |||||||| |||||| ||||| ||||||||||||||||    
T  29842633 tcaactgaataatctttatgagagttttttcgaccaacactccaatatgatatt 29842686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 278 - 378
Target Start/End: Complemental strand, 27215873 - 27215773
Alignment:
Q  278 aacaagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctttattaggaatggtttcata 377  Q
    ||||||||||||| ||||| ||||| | ||| | |||||| | ||||||| | || |||||||||||| ||||||| |||||||| |||||  |||||||    
T  27215873 aacaagcaatgtctagaaagacactcttctccttttcctccagagcatcatagctgactttaagtatcctttggatctctttattgggaatcttttcata 27215774  T
Q  378 c 378  Q
    |    
T  27215773 c 27215773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 139
Target Start/End: Complemental strand, 27680654 - 27680522
Alignment:
Q  7 atcatactcactgtattctcttctaaaacttgaattatatcttcatgagatcataaccgactacgctttccaggttcttccggtgattccagtcgaacaa 106  Q
    ||||||||||| || || |||| |||||| |||||||||||||| |||   ||||||| ||| || | |||||| ||||  ||||||||  |||| || |    
T  27680654 atcatactcacagtgttttcttttaaaacatgaattatatcttcttgacgccataacctacttcgttctccaggctctttaggtgattcttgtcggacga 27680555  T
Q  107 tttccttacccatgtcctctatcaaggcatgta 139  Q
     ||| ||||||||||||| ||||||| ||||||    
T  27680554 cttctttacccatgtcctttatcaagtcatgta 27680522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 278 - 377
Target Start/End: Original strand, 28097204 - 28097303
Alignment:
Q  278 aacaagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctttattaggaatggtttcata 377  Q
    ||||||||||||| |||||||||||   |||||||||||| |||||||||||||| ||   |||||| ||||| || |||| | |||||||  |||||||    
T  28097204 aacaagcaatgtcgagaaaaacactcctctcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcata 28097303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 139
Target Start/End: Complemental strand, 26960799 - 26960685
Alignment:
Q  25 tcttctaaaacttgaattatatcttcatgagatcataaccgactacgctttccaggttcttccggtgattccagtcgaacaatttccttacccatgtcct 124  Q
    |||| |||||| |||| |||||| ||| || | || |||| ||| || |||||||| ||||    ||||||| |||||||||||||| ||||||| ||||    
T  26960799 tcttgtaaaacatgaactatatcatcacgacaccacaacctactgcgttttccaggctctttaattgattcctgtcgaacaatttccatacccatatcct 26960700  T
Q  125 ctatcaaggcatgta 139  Q
    |||||||| ||||||    
T  26960699 ctatcaagtcatgta 26960685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 278 - 368
Target Start/End: Original strand, 27603465 - 27603555
Alignment:
Q  278 aacaagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctttattaggaat 368  Q
    ||||||||||||| ||||| ||||| ||||  |||||||| ||||||||| | ||||||||||| ||||  ||||| | |||||| |||||    
T  27603465 aacaagcaatgtctagaaagacactctgctgctcttcctccaaagcatcatagcttactttaagaatctcgtggatctttttattgggaat 27603555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 139
Target Start/End: Complemental strand, 28141212 - 28141098
Alignment:
Q  25 tcttctaaaacttgaattatatcttcatgagatcataaccgactacgctttccaggttcttccggtgattccagtcgaacaatttccttacccatgtcct 124  Q
    |||||||||||||| | ||| |||| |||  | ||||| | ||| || || ||||| ||||  ||||||||  ||||||||||||| |||||||| ||||    
T  28141212 tcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcct 28141113  T
Q  125 ctatcaaggcatgta 139  Q
    |||||||| ||||||    
T  28141112 ctatcaagtcatgta 28141098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 228
Target Start/End: Complemental strand, 28150848 - 28150646
Alignment:
Q  26 cttctaaaacttgaattatatcttcatgagatcataaccgactacgctttccaggttcttccggtgattccagtcgaacaatttccttacccatgtcctc 125  Q
    ||||||||||||||| |||||||||||   | || ||||   | ||||| ||||| ||||  ||||||||  |||| |||||||| ||||||||||| ||    
T  28150848 cttctaaaacttgaaatatatcttcatagaaccacaacctgttgcgcttcccaggctcttttggtgattcttgtcgtacaatttctttacccatgtcttc 28150749  T
Q  126 tatcaaggcatgtagagtcaatttactatgcgaactaatctgtatgagagatttttcaaccaatactccaatatgatatttcatgcaagcatcataatga 225  Q
    ||||||| ||||||  || |  | ||   | | || ||| | ||  |||||||||| |||||| |||||||||||||||||||||||   | ||||||||    
T  28150748 tatcaagtcatgtaatgttacataaccccgaggacaaatttttagaagagattttttaaccaacactccaatatgatatttcatgcattgaccataatga 28150649  T
Q  226 gca 228  Q
    |||    
T  28150648 gca 28150646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 353
Target Start/End: Complemental strand, 28182533 - 28182455
Alignment:
Q  275 agaaacaagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatcttttggat 353  Q
    ||||||||| |||||| ||||||||| | |||||||| ||||| | ||||||| | || ||||||||||||| ||||||    
T  28182533 agaaacaagaaatgtccagaaaaacattctgctcatcatcctccagagcatcatagctaactttaagtatctcttggat 28182455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 378
Target Start/End: Complemental strand, 25484480 - 25484380
Alignment:
Q  278 aacaagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctttattaggaatggtttcata 377  Q
    ||||||||||||| ||||| ||||| || || | |||||  ||||||||| | ||||||| ||||||| ||||||| |||||||  |||||  |||||||    
T  25484480 aacaagcaatgtctagaaagacactctgatccttttccttcaaagcatcatagcttacttgaagtatcctttggatatctttatcgggaatattttcata 25484381  T
Q  378 c 378  Q
    |    
T  25484380 c 25484380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 378
Target Start/End: Complemental strand, 25512312 - 25512212
Alignment:
Q  278 aacaagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctttattaggaatggtttcata 377  Q
    ||||||||||||| ||||| ||||| || || | |||||  ||||||||| | ||||||| ||||||| ||||||| |||||||  |||||  |||||||    
T  25512312 aacaagcaatgtctagaaagacactctgatccttttccttcaaagcatcatagcttacttgaagtatcctttggatatctttatcgggaatattttcata 25512213  T
Q  378 c 378  Q
    |    
T  25512212 c 25512212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 378
Target Start/End: Complemental strand, 26057343 - 26057243
Alignment:
Q  278 aacaagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctttattaggaatggtttcata 377  Q
    ||||||||||||| ||||| ||||| || || | |||||  ||||||||| | ||||||| ||||||| ||||||| |||||||  |||||  |||||||    
T  26057343 aacaagcaatgtctagaaagacactctgatccttttccttcaaagcatcatagcttacttgaagtatcctttggatatctttatcgggaatattttcata 26057244  T
Q  378 c 378  Q
    |    
T  26057243 c 26057243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 378
Target Start/End: Complemental strand, 26077313 - 26077213
Alignment:
Q  278 aacaagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctttattaggaatggtttcata 377  Q
    ||||||||||||| ||||| ||||| || || | |||||  ||||||||| | ||||||| ||||||| ||||||| |||||||  |||||  |||||||    
T  26077313 aacaagcaatgtctagaaagacactctgatccttttccttcaaagcatcatagcttacttgaagtatcctttggatatctttatcgggaatattttcata 26077214  T
Q  378 c 378  Q
    |    
T  26077213 c 26077213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 378
Target Start/End: Complemental strand, 26144289 - 26144189
Alignment:
Q  278 aacaagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctttattaggaatggtttcata 377  Q
    ||||||||||||| ||||| ||||| || || | |||||  ||||||||| | ||||||| ||||||| ||||||| |||||||  |||||  |||||||    
T  26144289 aacaagcaatgtctagaaagacactctgatccttttccttcaaagcatcatagcttacttgaagtatcctttggatatctttatcgggaatattttcata 26144190  T
Q  378 c 378  Q
    |    
T  26144189 c 26144189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 277 - 377
Target Start/End: Complemental strand, 26657384 - 26657284
Alignment:
Q  277 aaacaagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctttattaggaatggtttcat 376  Q
    |||||||| || || | ||| ||||||||||| |||||||| ||| ||||| | |||||||||||||||| ||| || | |||||| |||||  ||||||    
T  26657384 aaacaagctatatctaaaaagacactttgctcctcttcctccaaatcatcatagcttactttaagtatctcttgaatctttttattgggaatcttttcat 26657285  T
Q  377 a 377  Q
    |    
T  26657284 a 26657284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 161 - 213
Target Start/End: Complemental strand, 26657494 - 26657442
Alignment:
Q  161 taatctgtatgagagatttttcaaccaatactccaatatgatatttcatgcaa 213  Q
    |||||| ||||||||||||||||||||| ||||||| ||||| ||| ||||||    
T  26657494 taatctctatgagagatttttcaaccaacactccaacatgatgttttatgcaa 26657442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 277 - 377
Target Start/End: Complemental strand, 26763355 - 26763255
Alignment:
Q  277 aaacaagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctttattaggaatggtttcat 376  Q
    |||||||| || || | ||| ||||||||||| |||||||| ||| ||||| | |||||||||||||||| ||| || | |||||| |||||  ||||||    
T  26763355 aaacaagctatatctaaaaagacactttgctcctcttcctccaaatcatcatagcttactttaagtatctcttgaatctttttattgggaatcttttcat 26763256  T
Q  377 a 377  Q
    |    
T  26763255 a 26763255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 161 - 213
Target Start/End: Complemental strand, 26763465 - 26763413
Alignment:
Q  161 taatctgtatgagagatttttcaaccaatactccaatatgatatttcatgcaa 213  Q
    |||||| ||||||||||||||||||||| ||||||| ||||| ||| ||||||    
T  26763465 taatctctatgagagatttttcaaccaacactccaacatgatgttttatgcaa 26763413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 161 - 233
Target Start/End: Complemental strand, 26938561 - 26938489
Alignment:
Q  161 taatctgtatgagagatttttcaaccaatactccaatatgatatttcatgcaagcatcataatgagcatgaag 233  Q
    |||||| |||||||||||| | |||||| ||||||| ||||| ||| ||||||  | ||||||||||||||||    
T  26938561 taatctttatgagagatttattaaccaacactccaacatgattttttatgcaatgaccataatgagcatgaag 26938489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 362
Target Start/End: Original strand, 25492077 - 25492164
Alignment:
Q  275 agaaacaagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctttatt 362  Q
    |||||||||  ||||| ||||| | ||| ||||| | |||||| ||||||||| | || ||| |||||||||||||||| ||||||||    
T  25492077 agaaacaagtcatgtctagaaagatactctgctccttttcctccaaagcatcatagctcactctaagtatcttttggatctctttatt 25492164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 353
Target Start/End: Complemental strand, 26825240 - 26825165
Alignment:
Q  278 aacaagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatcttttggat 353  Q
    ||||||||||||| || ||||||||||| |  ||||| || ||||||||| | |||||| ||||||||| ||||||    
T  26825240 aacaagcaatgtcgaggaaaacactttgttgctcttcttccaaagcatcatagcttactctaagtatctcttggat 26825165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 358
Target Start/End: Complemental strand, 26951123 - 26951084
Alignment:
Q  319 aaagcatcaaaacttactttaagtatcttttggatgtctt 358  Q
    ||||||||||| ||||||||||||||||||||||| ||||    
T  26951123 aaagcatcaaagcttactttaagtatcttttggatatctt 26951084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 353
Target Start/End: Complemental strand, 26978769 - 26978726
Alignment:
Q  310 tcttcctctaaagcatcaaaacttactttaagtatcttttggat 353  Q
    ||||| || ||||||||||| |||||||||||||||||||||||    
T  26978769 tcttcgtccaaagcatcaaagcttactttaagtatcttttggat 26978726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 139
Target Start/End: Complemental strand, 28327155 - 28327041
Alignment:
Q  25 tcttctaaaacttgaattatatcttcatgagatcataaccgactacgctttccaggttcttccggtgattccagtcgaacaatttccttacccatgtcct 124  Q
    |||||||| || ||||||||||||| |||| | || |||| |||||  |||||||||||||   | |||||  ||||||||||||| ||||| || | ||    
T  28327155 tcttctaagacatgaattatatctttatgaaaccacaacctactacattttccaggttcttttagggattcttgtcgaacaatttctttacctatttgct 28327056  T
Q  125 ctatcaaggcatgta 139  Q
    | || ||||||||||    
T  28327055 ccattaaggcatgta 28327041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #56
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 139
Target Start/End: Complemental strand, 28504791 - 28504677
Alignment:
Q  25 tcttctaaaacttgaattatatcttcatgagatcataaccgactacgctttccaggttcttccggtgattccagtcgaacaatttccttacccatgtcct 124  Q
    |||||||| || ||||||||||||| |||| | || |||| |||||  |||||||||||||   | |||||  ||||||||||||| ||||| || | ||    
T  28504791 tcttctaagacatgaattatatctttatgaaaccacaacctactacattttccaggttcttttagggattcttgtcgaacaatttctttacctatttgct 28504692  T
Q  125 ctatcaaggcatgta 139  Q
    | || ||||||||||    
T  28504691 ccattaaggcatgta 28504677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #57
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 250
Target Start/End: Complemental strand, 26885599 - 26885510
Alignment:
Q  161 taatctgtatgagagatttttcaaccaatactccaatatgatatttcatgcaagcatcataatgagcatgaagcatattttctacatctg 250  Q
    |||||| || |||||||||||| ||||| ||||||| ||||| ||| ||||||    |||||||||||||||| |||| ||| || ||||    
T  26885599 taatctttaagagagatttttcgaccaacactccaacatgatgttttatgcaatggccataatgagcatgaagtatatcttcgacctctg 26885510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #58
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 481
Target Start/End: Original strand, 27664107 - 27664176
Alignment:
Q  412 tctttccaaataaattggaacctattactatcaaagccaatggaagtccagaagcatatgctactgcacg 481  Q
    |||||||||| || |||||||| | |||| | ||||| |||||||| |||||||||||| | ||||||||    
T  27664107 tctttccaaacaagttggaacccactacttttaaagctaatggaaggccagaagcatattcaactgcacg 27664176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #59
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 139
Target Start/End: Complemental strand, 26863259 - 26863131
Alignment:
Q  11 tactcactgtattctcttctaaaacttgaattatatcttcatgagatcataaccgactacgctttccaggttcttccggtgattccagtcgaacaatttc 110  Q
    ||||||| || || ||||||||||| || |||||||| |||||| | ||||||| ||| || |  || || ||||  || |||||  |||| || |||||    
T  26863259 tactcacagtgttttcttctaaaacgtggattatatcatcatgacaccataacctacttcgttcacccggctctttaggagattcttgtcggacgatttc 26863160  T
Q  111 cttacccatgtcctctatcaaggcatgta 139  Q
     || |||||||||||||||||| ||||||    
T  26863159 tttgcccatgtcctctatcaagtcatgta 26863131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #60
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 310 - 358
Target Start/End: Original strand, 27664007 - 27664055
Alignment:
Q  310 tcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctt 358  Q
    ||||| || |||| |||||| ||||||||||||||||||||||| ||||    
T  27664007 tcttcttccaaagtatcaaagcttactttaagtatcttttggatatctt 27664055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #61
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 29758946 - 29758982
Alignment:
Q  11 tactcactgtattctcttctaaaacttgaattatatc 47  Q
    ||||||||||||| |||||||||||||| ||||||||    
T  29758946 tactcactgtattttcttctaaaacttgcattatatc 29758982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 278 - 398
Target Start/End: Complemental strand, 40936 - 40820
Alignment:
Q  278 aacaagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctttattaggaatggtttcata 377  Q
    ||||||||||||| |||||||||||||||||||||| ||| |||||||||||    |||||||||||||||||||| |||||||| |||||  |||||||    
T  40936 aacaagcaatgtcgagaaaaacactttgctcatctttctccaaagcatcaaa----actttaagtatcttttggatctctttatttggaatcctttcata 40841  T
Q  378 ccggtgtaatgcagattccca 398  Q
    | ||| |||||  ||||||||    
T  40840 ctggtctaatgtggattccca 40820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 280 - 480
Target Start/End: Complemental strand, 44376 - 44178
Alignment:
Q  280 caagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctttattaggaatggtttcatacc 379  Q
    ||||||||||| ||||||||| | |||||||||| ||| ||||||||||| ||||||||||||||||  || || | |||| | |||||  ||  |||||    
T  44376 caagcaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctatacc 44277  T
Q  380 ggtgtaatgcagattcccactcttgtatactgtctttccaaataaattggaacctattactatcaaagccaatggaagtccagaagcatatgctactgca 479  Q
    | | ||||||||||| ||| |||  ||||   | ||||||||||| || ||||| | ||||   |||||||||||||| ||||||||||| | |||||||    
T  44276 gatctaatgcagatttccattctcctata--ttatttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcataagttactgca 44179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 278 - 368
Target Start/End: Original strand, 2300 - 2390
Alignment:
Q  278 aacaagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctttattaggaat 368  Q
    ||||||||||||| ||||| ||||||||||  |||||||| ||||||||| ||||||||||||||||||||||||| |||||||| |||||    
T  2300 aacaagcaatgtctagaaagacactttgctgctcttcctccaaagcatcataacttactttaagtatcttttggatctctttattgggaat 2390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 11 - 139
Target Start/End: Complemental strand, 26137570 - 26137442
Alignment:
Q  11 tactcactgtattctcttctaaaacttgaattatatcttcatgagatcataaccgactacgctttccaggttcttccggtgattccagtcgaacaatttc 110  Q
    ||||||||||||| |||| |||||| |||| ||||||||||||| | || |||| ||| || |||||||||||||  ||||||||  |||| ||||||||    
T  26137570 tactcactgtattttcttttaaaacatgaactatatcttcatgaaaccacaacctactgcgttttccaggttctttgggtgattcttgtcggacaatttc 26137471  T
Q  111 cttacccatgtcctctatcaaggcatgta 139  Q
     |||||||| |||||||||||| ||||||    
T  26137470 tttacccatatcctctatcaagtcatgta 26137442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 13 - 130
Target Start/End: Original strand, 5921971 - 5922088
Alignment:
Q  13 ctcactgtattctcttctaaaacttgaattatatcttcatgagatcataaccgactacgctttccaggttcttccggtgattccagtcgaacaatttcct 112  Q
    ||||| ||||| |||||||||||||||| |||||||||| |  | ||||||| ||| ||||||||||| |||| |||||||||  ||| ||||||||| |    
T  5921971 ctcaccgtattttcttctaaaacttgaactatatcttcagggcaccataacctactgcgctttccaggctctttcggtgattcttgtctaacaatttctt 5922070  T
Q  113 tacccatgtcctctatca 130  Q
    | ||||||||||||||||    
T  5922071 ttcccatgtcctctatca 5922088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 377
Target Start/End: Original strand, 28132262 - 28132361
Alignment:
Q  278 aacaagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctttattaggaatggtttcata 377  Q
    ||||||| || || ||||| ||||||||||| |||||||| ||||||||  |||||||||||| |||||  ||||| | ||||||||||||  |||||||    
T  28132262 aacaagctatatccagaaagacactttgctcctcttcctccaaagcatcgtaacttactttaaatatctcatggatctttttattaggaatcttttcata 28132361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 278 - 368
Target Start/End: Original strand, 267101 - 267191
Alignment:
Q  278 aacaagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctttattaggaat 368  Q
    ||||||||||||| | ||| ||||| ||||| ||||| || ||| ||||| | || |||||||||||||||||||| |||||||| |||||    
T  267101 aacaagcaatgtctaaaaagacactctgctcctcttcttccaaaccatcatagctcactttaagtatcttttggatctctttattgggaat 267191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 292 - 377
Target Start/End: Original strand, 28126450 - 28126535
Alignment:
Q  292 agaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctttattaggaatggtttcata 377  Q
    ||||| |||||||||||||||||||| ||||||||| | |||| ||||| ||||| |||||| | |||||| |||||  |||||||    
T  28126450 agaaagacactttgctcatcttcctccaaagcatcatagcttagtttaaatatctcttggatctttttatttggaatcttttcata 28126535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 338
Target Start/End: Original strand, 5922230 - 5922290
Alignment:
Q  278 aacaagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttacttt 338  Q
    |||||||||| |||||||||||||||| ||| ||||| || ||||||||||| || |||||    
T  5922230 aacaagcaatatcaagaaaaacacttttctcttcttcttccaaagcatcaaagctcacttt 5922290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 169 - 255
Target Start/End: Original strand, 28126333 - 28126419
Alignment:
Q  169 atgagagatttttcaaccaatactccaatatgatatttcatgcaagcatcataatgagcatgaagcatattttctacatctgccaat 255  Q
    |||||||||||||||||||| ||||||| |||||  || ||||||    |||||||||||||||| || ||||| || |||| ||||    
T  28126333 atgagagatttttcaaccaacactccaacatgatgctttatgcaatggccataatgagcatgaagtatcttttcaacctctgtcaat 28126419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 161 - 213
Target Start/End: Original strand, 28132151 - 28132203
Alignment:
Q  161 taatctgtatgagagatttttcaaccaatactccaatatgatatttcatgcaa 213  Q
    |||||| ||||||||||||||| ||||| ||||||| ||||| ||| ||||||    
T  28132151 taatctctatgagagatttttcgaccaacactccaacatgatgttttatgcaa 28132203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 275 - 479
Target Start/End: Original strand, 57052 - 57254
Alignment:
Q  275 agaaacaagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctttattaggaatggtttc 374  Q
    ||||||||| |||||| ||||||||| | | |||||||||||| ||||||||||| |||||||||||||||| |||||| | |||| | |||||  ||||    
T  57052 agaaacaagaaatgtcgagaaaaacattcttctcatcttcctccaaagcatcaaagcttactttaagtatctcttggatctttttaatgggaatcctttc 57151  T
Q  375 ataccggtgtaatgcagattcccactcttgtatactgtctttccaaataaattggaacctattactatcaaagccaatggaagtccagaagcatatgcta 474  Q
    |||| | | ||||||||||| ||| |||  ||||   |||||||||| || || ||||| | ||||   || ||||||||||| || |||||||| | ||    
T  57152 atactgatttaatgcagatttccattctcctata--ttctttccaaacaagttcgaacccactacttctaaggccaatggaaggcctgaagcataagtta 57249  T
Q  475 ctgca 479  Q
    |||||    
T  57250 ctgca 57254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 278 - 377
Target Start/End: Complemental strand, 8908 - 8809
Alignment:
Q  278 aacaagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctttattaggaatggtttcata 377  Q
    |||| |||||||| ||||||||||||||||  |||||||| ||||||||| ||||||||||||||||||  ||||| | |||||| |||||  |||||||    
T  8908 aacaggcaatgtctagaaaaacactttgctgctcttcctccaaagcatcataacttactttaagtatctcgtggatctttttattgggaatcttttcata 8809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 278 - 379
Target Start/End: Complemental strand, 60990 - 60889
Alignment:
Q  278 aacaagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctttattaggaatggtttcata 377  Q
    ||||||||||||| ||||| ||||||||||| |||||||| |||| |||| | || |||||||||||  ||||||| |||||||| |||||  |||||||    
T  60990 aacaagcaatgtctagaaagacactttgctcctcttcctccaaagaatcatagctcactttaagtattctttggatctctttattgggaatcttttcata 60891  T
Q  378 cc 379  Q
    ||    
T  60890 cc 60889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 278 - 379
Target Start/End: Complemental strand, 18075182 - 18075081
Alignment:
Q  278 aacaagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctttattaggaatggtttcata 377  Q
    ||||||||||||| ||||| ||||||||||| |||||||| |||| |||| | || |||||||||||  ||||||| |||||||| |||||  |||||||    
T  18075182 aacaagcaatgtctagaaagacactttgctcctcttcctccaaagaatcatagctcactttaagtattctttggatctctttattgggaatcttttcata 18075083  T
Q  378 cc 379  Q
    ||    
T  18075082 cc 18075081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 277 - 358
Target Start/End: Original strand, 18654233 - 18654314
Alignment:
Q  277 aaacaagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctt 358  Q
    ||||||||||| || | ||| |||||||| |  ||||| || ||||||||||||||||||||||||||||||||||| ||||    
T  18654233 aaacaagcaatatccaaaaagacactttgttgttcttcatccaaagcatcaaaacttactttaagtatcttttggatatctt 18654314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 278 - 378
Target Start/End: Original strand, 5089711 - 5089811
Alignment:
Q  278 aacaagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctttattaggaatggtttcata 377  Q
    ||||||||||||| || |||||||| ||||||| |||  |||||  || ||| || ||| |||||||||||||||| ||||||||||||||  |||||||    
T  5089711 aacaagcaatgtcgaggaaaacactctgctcatattcacctaaattattaaagctcactataagtatcttttggatttctttattaggaatcctttcata 5089810  T
Q  378 c 378  Q
    |    
T  5089811 c 5089811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 275 - 358
Target Start/End: Original strand, 18688380 - 18688463
Alignment:
Q  275 agaaacaagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctt 358  Q
    ||||||||||||| || | ||| |||||||| |  ||||| || ||||||||||| ||||||||||||||||||||||| ||||    
T  18688380 agaaacaagcaatatccaaaaagacactttgttgttcttcgtccaaagcatcaaagcttactttaagtatcttttggatatctt 18688463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 275 - 358
Target Start/End: Original strand, 18698154 - 18698237
Alignment:
Q  275 agaaacaagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctt 358  Q
    ||||||||||||| || | ||| |||||||| |  ||||| || ||||||||||| ||||||||||||||||||||||| ||||    
T  18698154 agaaacaagcaatatccaaaaagacactttgttgttcttcgtccaaagcatcaaagcttactttaagtatcttttggatatctt 18698237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 275 - 358
Target Start/End: Original strand, 18730258 - 18730341
Alignment:
Q  275 agaaacaagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctt 358  Q
    ||||||||||||| || | ||| |||||||| |  ||||| || ||||||||||| ||||||||||||||||||||||| ||||    
T  18730258 agaaacaagcaatatccaaaaagacactttgttgttcttcgtccaaagcatcaaagcttactttaagtatcttttggatatctt 18730341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 275 - 358
Target Start/End: Original strand, 18678314 - 18678397
Alignment:
Q  275 agaaacaagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctt 358  Q
    ||||||||||||| || | ||| ||| |||| |  ||||| || ||||||||||| ||||||||||||||||||||||| ||||    
T  18678314 agaaacaagcaatatccaaaaagacaatttgttgttcttcgtccaaagcatcaaagcttactttaagtatcttttggatatctt 18678397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 275 - 358
Target Start/End: Original strand, 18722839 - 18722922
Alignment:
Q  275 agaaacaagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctt 358  Q
    ||||||||||||| || | ||| |||||||| |  |||||  | ||||||||||| ||||||||||||||||||||||| ||||    
T  18722839 agaaacaagcaatatccaaaaagacactttgttgttcttcgcccaaagcatcaaagcttactttaagtatcttttggatatctt 18722922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 162 - 228
Target Start/End: Original strand, 5089601 - 5089667
Alignment:
Q  162 aatctgtatgagagatttttcaaccaatactccaatatgatatttcatgcaagcatcataatgagca 228  Q
    ||||| |||||||||||| ||||||||   ||| ||||||||||||||||||  | |||||||||||    
T  5089601 aatctttatgagagatttatcaaccaactttcctatatgatatttcatgcaataaccataatgagca 5089667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 10 - 127
Target Start/End: Complemental strand, 615479 - 615362
Alignment:
Q  10 atactcactgtattctcttctaaaacttgaattatatcttcatgagatcataaccgactacgctttccaggttcttccggtgattccagtcgaacaattt 109  Q
    |||||||| ||||| |||| |||||||||||||||||||| |  ||| ||||||||||| ||||| || || ||||| ||||||||  ||| ||||||||    
T  615479 atactcacagtattttcttgtaaaacttgaattatatctttagaagaccataaccgacttcgcttcccgggatcttcgggtgattcttgtctaacaattt 615380  T
Q  110 ccttacccatgtcctcta 127  Q
    | || ||||| |||||||    
T  615379 ctttccccatatcctcta 615362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1870 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold1870
Description:

Target: scaffold1870; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 278 - 377
Target Start/End: Complemental strand, 190 - 91
Alignment:
Q  278 aacaagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctttattaggaatggtttcata 377  Q
    |||| |||||||| ||||||||||||||||  |||||||| ||||||||| | ||||||||||||||||  ||||| | |||||| |||||  |||||||    
T  190 aacaggcaatgtctagaaaaacactttgctgctcttcctccaaagcatcatagcttactttaagtatctcgtggatctttttattgggaatcttttcata 91  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 278 - 377
Target Start/End: Original strand, 3473 - 3572
Alignment:
Q  278 aacaagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctttattaggaatggtttcata 377  Q
    |||| |||||||| ||||||||||||||||  |||||||| ||||||||| | ||||||||||||||||  ||||| | |||||| |||||  |||||||    
T  3473 aacaggcaatgtctagaaaaacactttgctgctcttcctccaaagcatcatagcttactttaagtatctggtggatctttttattgggaatcttttcata 3572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 278 - 377
Target Start/End: Original strand, 12436 - 12535
Alignment:
Q  278 aacaagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctttattaggaatggtttcata 377  Q
    |||| |||||||| ||||||||||||||||  |||||||| ||||||||| | ||||||||||||||||  ||||| | |||||| |||||  |||||||    
T  12436 aacaggcaatgtctagaaaaacactttgctgctcttcctccaaagcatcatagcttactttaagtatctcgtggatctttttattgggaatcttttcata 12535  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 278 - 344
Target Start/End: Complemental strand, 16692288 - 16692222
Alignment:
Q  278 aacaagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtat 344  Q
    ||||||||||||| | ||||||||| |  ||||||||||| |||  |||||||||||||||||||||    
T  16692288 aacaagcaatgtccaaaaaaacactcttttcatcttcctccaaactatcaaaacttactttaagtat 16692222  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 228
Target Start/End: Complemental strand, 16692399 - 16692332
Alignment:
Q  161 taatctgtatgagagatttttcaaccaatactccaatatgatatttcatgcaagcatcataatgagca 228  Q
    |||||| ||| || |||||||||||||||||||||||||| ||||| |||||   | |||||||||||    
T  16692399 taatctttataagggatttttcaaccaatactccaatatggtattttatgcatttaccataatgagca 16692332  T

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Target: scaffold0012 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 238364 - 238402
Alignment:
Q  11 tactcactgtattctcttctaaaacttgaattatatctt 49  Q
    ||||||| ||||| |||||||||||||||||||||||||    
T  238364 tactcaccgtattttcttctaaaacttgaattatatctt 238402  T

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Target: scaffold0012; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 327
Target Start/End: Original strand, 238626 - 238675
Alignment:
Q  278 aacaagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatca 327  Q
    |||| |||||||||||||||||| ||| ||| ||||||| ||||||||||    
T  238626 aacatgcaatgtcaagaaaaacaattttctcttcttcctgtaaagcatca 238675  T

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