View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4637-Insertion-6 (Length: 472)
Name: NF4637-Insertion-6
Description: NF4637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4637-Insertion-6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 36 - 472
Target Start/End: Original strand, 38028883 - 38029319
Alignment:
| Q |
36 |
taacaaccttgaatttgcatacctgttgatacaccacaactgaggaggcatgccctgttgggaggaattgctggatcaatcttgagtagattggcagtgt |
135 |
Q |
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| T |
38028883 |
taacaaccttgaatttgcatacctgttgatacaccacaactgaggaggcatgccctgttgggaggaattgctggatcaatcttgagtagattggcagtgt |
38028982 |
T |
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| Q |
136 |
caaccacagtgtactcgctaaaactcgagacaaatatgaaatggtttataatctctccatttagatcagtgaatctggtggtatcatatctaagcatcca |
235 |
Q |
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| T |
38028983 |
caaccacagtgtactcgctaaaactcgagacaaatatgaaatggtttataatctctccatttagattagtgaatctggtggtatcatatctaagcatcca |
38029082 |
T |
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| Q |
236 |
aggtttaacatcaaaaggaaactttgaacaaaggttgctctttgttgatttgcaatctatgcactcttcacaatcagccatgaagattgggataacaatg |
335 |
Q |
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| T |
38029083 |
aggtttaacatcaaaaggaaactttgaacaaaggttgctctttgttgatttgcaatctatgcactcttcacaatcagccatgaagattgggataacaatg |
38029182 |
T |
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| Q |
336 |
tctccttttgtaacttctgttactccctctccaacactttccacaaccctgaatcacataaaaattaattaaaacttggacatcatcaacttctatagta |
435 |
Q |
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| T |
38029183 |
tctccttttgtaacttctgttactccctctccaacactttccacaaccctgaatcacataaaaattaattaaaacttgaacatcatcaacttctatagta |
38029282 |
T |
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| Q |
436 |
ttaaaataataatgtatgaaaaaatgagaccaacata |
472 |
Q |
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| T |
38029283 |
ttaaaataataatgtatgaaaaaatgagaccaacata |
38029319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 68 - 401
Target Start/End: Complemental strand, 35614692 - 35614359
Alignment:
| Q |
68 |
accacaactgaggaggcatgccctgttgggaggaattgctggatcaatcttgagtagattggcag-tgtcaaccacagtgtactcgctaaaactcgagac |
166 |
Q |
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| T |
35614692 |
accacaacttaaaaggcacgccccgttgggaggaatttctgggtcaatctttgttacattggcaaatgtca-ccacagtgtactcgctgaaacttgaaac |
35614594 |
T |
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| Q |
167 |
aaatatgaaatggtttataatctctccatttagatcagtgaatctggtggtatcatatctaagcatccaaggtttaacatcaaaaggaaactttgaacaa |
266 |
Q |
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| T |
35614593 |
atacatgaaatgatgtatgatctctccgtttaggtctgtgaatctggtgttctcatgtctaggcatccaaggagaaactttgaacgggaaattagtacaa |
35614494 |
T |
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| Q |
267 |
aggttgctctttgttgatttgcaatctatgcactcttcacaatcagccatgaagattgggataacaatgtctccttttgtaacttctgttactccctctc |
366 |
Q |
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| T |
35614493 |
aggttgctcttggttgatttgcaatctatacactctccacaatctggtagaaaaattggaataaccacatctccttttgtaacttcagttacattcttcc |
35614394 |
T |
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| Q |
367 |
caacactttccacaaccctgaatcacataaaaatt |
401 |
Q |
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| T |
35614393 |
caacactttccacaaccctatgtcacataaaaatt |
35614359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 55 - 211
Target Start/End: Complemental strand, 35610217 - 35610061
Alignment:
| Q |
55 |
tacctgttgatacaccacaactgaggaggcatgccctgttgggaggaattgctggatcaatcttgagtagattggcagtgtcaaccacagtgtactcgct |
154 |
Q |
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| T |
35610217 |
tacctgtcgatacaccacaaccgagaaggcaggccctatgaggagggatttgtggatcaatctttagtacattggcaatgtcaaccacggtatactcact |
35610118 |
T |
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| Q |
155 |
aaaactcgagacaaatatgaaatggtttataatctctccatttagatcagtgaatct |
211 |
Q |
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| T |
35610117 |
gaaacttgaaataaacatgaaatgatatatgatctctccgtttaggtcagtgaatct |
35610061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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