View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4637_high_1_N (Length: 492)
Name: NF4637_high_1_N
Description: NF4637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4637_high_1_N |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 29 - 492
Target Start/End: Original strand, 1030464 - 1030907
Alignment:
| Q |
29 |
aactccagccagggccacattactgataagaaggaaatgaccatgccaatgacatatcttattattacaatggccattatttacgtcggatgggaaactg |
128 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1030464 |
aactccagccagggccacattactgatgggaaggaaatgaccatgccaatgacatatcttattattacaatggccattatttacgtgggatgggaaactg |
1030563 |
T |
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| Q |
129 |
ataccaaggacctccaaagccatattcaaagcatacatacagccttccacgtgcaattctgcataggttcaacactcagagagactctcctagtgagaaa |
228 |
Q |
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| T |
1030564 |
ataccaaggacctccaaagccatgttcaaagcatacatacagccttccacgtgcaattctgcaaaggttcaacactcagagagactctcctagtgagaaa |
1030663 |
T |
|
| Q |
229 |
attctagatgccccattcccatcctcatcctcagtatatcagttctgcacagcagaatacttgtatggcagcctttcttaatggtttcatgtatgatgat |
328 |
Q |
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| T |
1030664 |
attcc--------------------catcctcagtatatcagttctgcacagcagaatacttgtatggcagcctttcttaatggtttcatgtatgatgat |
1030743 |
T |
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| Q |
329 |
ccagaaaataaagctcgtaattcaaaagctcatgttagaattactgaattgaacatacaagcaacgacaaatgatgtgcaatgctcgtcgtgacagaagg |
428 |
Q |
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| T |
1030744 |
ccagaaaataaagctcgtaattcaaaagctcatgttagaattactgaattgaacatacaagcaacgacaaatgatgtgcaatgctcatcgtgacagaagg |
1030843 |
T |
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| Q |
429 |
taatcaggaaaacataaacgaagatgtctaactggctgaaactatcaagcaacgtgcttcttct |
492 |
Q |
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| T |
1030844 |
taatcaggaaaacataaacgaagatgtctaactggctgaaactatcaagcaacgtgcttcttct |
1030907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 29 - 380
Target Start/End: Complemental strand, 55891421 - 55891070
Alignment:
| Q |
29 |
aactccagccagggccacattactgataagaaggaaatgaccatgccaatgacatatcttattattacaatggccattatttacgtcggatgggaaactg |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55891421 |
aactccagccagggccacattactgataagaaggaaatgaccatgccaatgacatatcttattattacaatggccattatttacgtcggatgggaaactg |
55891322 |
T |
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| Q |
129 |
ataccaaggacctccaaagccatattcaaagcatacatacagccttccacgtgcaattctgcataggttcaacactcagagagactctcctagtgagaaa |
228 |
Q |
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| T |
55891321 |
ataccaaggacctccaaagccatgttcaaagcatacatacagccttccacgtgcaattctgcaaaggttcaacactcagagaggctctcctagtgagaaa |
55891222 |
T |
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| Q |
229 |
attctagatgccccattcccatcctcatcctcagtatatcagttctgcacagcagaatacttgtatggcagcctttcttaatggtttcatgtatgatgat |
328 |
Q |
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| T |
55891221 |
attctagataccccattcccatcctcatcctcagtatatcagttctgcacagcagaatacttgtatggcagcctttcttaatggtttcatgtatgatgat |
55891122 |
T |
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| Q |
329 |
ccagaaaataaagctcgtaattcaaaagctcatgttagaattactgaattga |
380 |
Q |
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| T |
55891121 |
ccagaaaataaagctcgtaattcaaaagctcatgttagaattactgaattga |
55891070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 452 - 492
Target Start/End: Complemental strand, 55891038 - 55890998
Alignment:
| Q |
452 |
atgtctaactggctgaaactatcaagcaacgtgcttcttct |
492 |
Q |
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| T |
55891038 |
atgtctaactggctgaaactatcaagcaacgtgcttcttct |
55890998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 285 - 320
Target Start/End: Complemental strand, 55891070 - 55891035
Alignment:
| Q |
285 |
atacttgtatggcagcctttcttaatggtttcatgt |
320 |
Q |
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| T |
55891070 |
atacttgtatggcagcctttcttaatggtttcatgt |
55891035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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