View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4637_high_2 (Length: 335)
Name: NF4637_high_2
Description: NF4637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4637_high_2 |
 | |
|
| [»] chr4 (3 HSPs) |
| |
|
| [»] chr5 (2 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
| [»] scaffold0899 (1 HSPs) |
| | |
|
| [»] scaffold1230 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 5 - 335
Target Start/End: Complemental strand, 5278665 - 5278335
Alignment:
| Q |
5 |
gaggagcagagatccttatagtactggaaggtactctttatgttggatttgtcacatcaaatcaagacaacaatcgtctctttaccaaggtactcaacaa |
104 |
Q |
| |
|
||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
5278665 |
gaggaacagagatccttatagtacttgaaggcactctttatgttggatttgtcacatcaaatcaagacaacaatcgtctctttaccaaggtgctcaacaa |
5278566 |
T |
|
| Q |
105 |
gggtgatgtgtttgtgttcccgatcggtcttattcattttcagctgaatgtgggatatggcaacgctgttgctattgctggacttagcagtcaaaaccca |
204 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5278565 |
gggtgatgtgtttgtgttcccaattggtcttattcattttcaactgaatgtgggatatggcaacgctgttgctattgctggacttagcagtcaaaatcca |
5278466 |
T |
|
| Q |
205 |
ggagttatcactgttgcaaatgctttgtttaaatctgatcctcttatttccgacgaagttcttaccaaagcttttcaggtggataagagcataattgatt |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5278465 |
ggagttatcactgttgcaaatgctttgtttaaatcagatcctcttatttccgacgaagttcttaccaaagcttttcaagtggataagagcataattgatt |
5278366 |
T |
|
| Q |
305 |
atcttcaaaaacagtcttggtatgacaacaa |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
5278365 |
atcttcaaaaacagtcttggtatgacaacaa |
5278335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 5 - 335
Target Start/End: Complemental strand, 5286646 - 5286316
Alignment:
| Q |
5 |
gaggagcagagatccttatagtactggaaggtactctttatgttggatttgtcacatcaaatcaagacaacaatcgtctctttaccaaggtactcaacaa |
104 |
Q |
| |
|
||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
5286646 |
gaggaacagagatccttatagtacttgaaggcactctttatgttggatttgtcacttcaaatcaagacaacaatcgtctctttaccaaggtgctcaacaa |
5286547 |
T |
|
| Q |
105 |
gggtgatgtgtttgtgttcccgatcggtcttattcattttcagctgaatgtgggatatggcaacgctgttgctattgctggacttagcagtcaaaaccca |
204 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
5286546 |
gggtgatgtgtttgtgttcccaattggtcttattcattttcaactgaatgtgggatatggcaacgccgttgctattgctggacttagcagtcaaaatcca |
5286447 |
T |
|
| Q |
205 |
ggagttatcactgttgcaaatgctttgtttaaatctgatcctcttatttccgacgaagttcttaccaaagcttttcaggtggataagagcataattgatt |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5286446 |
ggagttatcactgttgcaaatgctttgtttaaatcagatcctcttatttccgacgaagttcttaccaaagcttttcaagtggataagagcataattgatt |
5286347 |
T |
|
| Q |
305 |
atcttcaaaaacagtcttggtatgacaacaa |
335 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |
|
|
| T |
5286346 |
atcttcaaaagcagtcttggtatgacaacaa |
5286316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 5 - 335
Target Start/End: Original strand, 5282431 - 5282761
Alignment:
| Q |
5 |
gaggagcagagatccttatagtactggaaggtactctttatgttggatttgtcacatcaaatcaagacaacaatcgtctctttaccaaggtactcaacaa |
104 |
Q |
| |
|
||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| ||||| || |||||||| |
|
|
| T |
5282431 |
gaggaacagagatccttatagtactcgaaggcactctttatgttggatttgtcacgtccaatcaagacaacaatcgtctcttcaccaaagtgctcaacaa |
5282530 |
T |
|
| Q |
105 |
gggtgatgtgtttgtgttcccgatcggtcttattcattttcagctgaatgtgggatatggcaacgctgttgctattgctggacttagcagtcaaaaccca |
204 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5282531 |
gggtgatgtgtttgtgttcccgattggtcttattcattttcagctgaatgtgggatatggcaacgctgttgctattgctggacttagcagtcaaaaccca |
5282630 |
T |
|
| Q |
205 |
ggagttatcactgttgcaaatgctttgtttaaatctgatcctcttatttccgacgaagttcttaccaaagcttttcaggtggataagagcataattgatt |
304 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
5282631 |
ggagttatcactgtagcaaatgctttgtttaaatcgaatccgcttatttccgacgaagttcttaccaaagcatttcaagtggataagagcataattgatt |
5282730 |
T |
|
| Q |
305 |
atcttcaaaaacagtcttggtatgacaacaa |
335 |
Q |
| |
|
|||||||||| ||||||||||| |||||||| |
|
|
| T |
5282731 |
atcttcaaaagcagtcttggtacgacaacaa |
5282761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 5 - 335
Target Start/End: Original strand, 20353823 - 20354153
Alignment:
| Q |
5 |
gaggagcagagatccttatagtactggaaggtactctttatgttggatttgtcacatcaaatcaagacaacaatcgtctctttaccaaggtactcaacaa |
104 |
Q |
| |
|
||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| ||||| || |||||||| |
|
|
| T |
20353823 |
gaggaacagagatccttatagtactcgaaggcactctttatgttggatttgtcacgtccaatcaagacaacaatcgtctcttcaccaaagtgctcaacaa |
20353922 |
T |
|
| Q |
105 |
gggtgatgtgtttgtgttcccgatcggtcttattcattttcagctgaatgtgggatatggcaacgctgttgctattgctggacttagcagtcaaaaccca |
204 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
20353923 |
gggtgatgtgtttgtgttcccaattggtcttattcattttcaactgaatgtgggatatggcaacgctgttgctattgctggacttagcagtcaaaatcca |
20354022 |
T |
|
| Q |
205 |
ggagttatcactgttgcaaatgctttgtttaaatctgatcctcttatttccgacgaagttcttaccaaagcttttcaggtggataagagcataattgatt |
304 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
20354023 |
ggagtaatcactgttgcaaacgctttgtttaaatctgatcctcttatttccgacgaagttcttaccaaagcttttcaagtggataagagcataattgatt |
20354122 |
T |
|
| Q |
305 |
atcttcaaaaacagtcttggtatgacaacaa |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
20354123 |
atcttcaaaaacagtcttggtatgacaacaa |
20354153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 5 - 335
Target Start/End: Complemental strand, 20358032 - 20357702
Alignment:
| Q |
5 |
gaggagcagagatccttatagtactggaaggtactctttatgttggatttgtcacatcaaatcaagacaacaatcgtctctttaccaaggtactcaacaa |
104 |
Q |
| |
|
||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
20358032 |
gaggaacagagatccttatagtacttgaaggcactctttatgttggatttgtcacttcaaatcaagacaacaatcgtctctttaccaaagtgctcaacaa |
20357933 |
T |
|
| Q |
105 |
gggtgatgtgtttgtgttcccgatcggtcttattcattttcagctgaatgtgggatatggcaacgctgttgctattgctggacttagcagtcaaaaccca |
204 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||| ||| |
|
|
| T |
20357932 |
gggtgatgtgtttgtgttcccaattggtcttattcattttcaactgaatgtgggatatggcaatgccgttgctattgctggacttagcagtcaaaatcca |
20357833 |
T |
|
| Q |
205 |
ggagttatcactgttgcaaatgctttgtttaaatctgatcctcttatttccgacgaagttcttaccaaagcttttcaggtggataagagcataattgatt |
304 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
20357832 |
ggagttatcaccgttgcaaatgctttgtttaaatcagatcctcttatttccgacgaagttcttaccaaagcttttcaagtggataagagcataattgatt |
20357733 |
T |
|
| Q |
305 |
atcttcaaaaacagtcttggtatgacaacaa |
335 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |
|
|
| T |
20357732 |
atcttcaaaagcagtcttggtatgacaacaa |
20357702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 11 - 335
Target Start/End: Complemental strand, 6235612 - 6235288
Alignment:
| Q |
11 |
cagagatccttatagtactggaaggtactctttatgttggatttgtcacatcaaatcaagacaacaatcgtctctttaccaaggtactcaacaagggtga |
110 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| ||||| || || ||||||||||| |
|
|
| T |
6235612 |
cagagatccttatagtactcgaaggcactctttatgttggatttgtcacgtccaatcaagacaacaatcgtctcttcaccaaagtgctaaacaagggtga |
6235513 |
T |
|
| Q |
111 |
tgtgtttgtgttcccgatcggtcttattcattttcagctgaatgtgggatatggcaacgctgttgctattgctggacttagcagtcaaaacccaggagtt |
210 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6235512 |
tgtgtttgtgttcccaattggtcttattcattttcaactaaatgtgggatatggcaacgctgttgctattgctggacttagcagtcaaaacccaggagtt |
6235413 |
T |
|
| Q |
211 |
atcactgttgcaaatgctttgtttaaatctgatcctcttatttccgacgaagttcttaccaaagcttttcaggtggataagagcataattgattatcttc |
310 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
6235412 |
atcaccgttgcaaatgctttgtttaaatctaatccgcttatttccgacgaagttcttaccaaagcttttcaagtggataagagcataattgattatcttc |
6235313 |
T |
|
| Q |
311 |
aaaaacagtcttggtatgacaacaa |
335 |
Q |
| |
|
|||| |||||||||||||||||||| |
|
|
| T |
6235312 |
aaaagcagtcttggtatgacaacaa |
6235288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0899 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0899
Description:
Target: scaffold0899; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 219 - 332
Target Start/End: Original strand, 3145 - 3257
Alignment:
| Q |
219 |
tgcaaatgctttgtttaaatctgatcctcttatttccgacgaagttcttaccaaagcttttcaggtggataagagcataattgattatcttcaaaaacag |
318 |
Q |
| |
|
|||||||||||| |||||||| |||| | |||||| || ||||||||||||||||||||| ||| || ||||||||||||||||||||| ||| ||| |
|
|
| T |
3145 |
tgcaaatgcttttcttaaatctaatccgcctatttctgaaaaagttcttaccaaagcttttcgagtgcattagagcataattgattatcttc-aaagcag |
3243 |
T |
|
| Q |
319 |
tcttggtatgacaa |
332 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
3244 |
tcttggtatgacaa |
3257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 79 - 228
Target Start/End: Complemental strand, 702528 - 702379
Alignment:
| Q |
79 |
cgtctctttaccaaggtactcaacaagggtgatgtgtttgtgttcccgatcggtcttattcattttcagctgaatgtgggatatggcaacgctgttgcta |
178 |
Q |
| |
|
|||||| |||| || ||||| ||||| || |||||||||||||| || || ||||| ||||| || || |||||||||||||||| || || ||||||| |
|
|
| T |
702528 |
cgtctcattacaaaagtactgaacaaaggagatgtgtttgtgtttccaattggtctcattcacttccaattgaatgtgggatatggaaatgcagttgcta |
702429 |
T |
|
| Q |
179 |
ttgctggacttagcagtcaaaacccaggagttatcactgttgcaaatgct |
228 |
Q |
| |
|
|||||||||||||||| ||||| ||||| || ||||| |||| |||||| |
|
|
| T |
702428 |
ttgctggacttagcagccaaaatccaggtgtaatcacaattgctaatgct |
702379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 200
Target Start/End: Complemental strand, 710860 - 710676
Alignment:
| Q |
13 |
gagatccttatagtactggaaggtactctttatgttggatttgtcacatcaaatcaagacaacaatcgtctctttaccaaggtactcaacaagggtgatg |
112 |
Q |
| |
|
||||| |||||||| |||| |||||||| ||||| || ||||| || || |||| ||| ||| |||||| | || || ||||| ||||| || |||| |
|
|
| T |
710860 |
gagattcttatagtgttggagggtactctctatgtcgggtttgttacttctaatccagaaaac---cgtctcatcacaaaagtactgaacaaaggagatg |
710764 |
T |
|
| Q |
113 |
tgtttgtgttcccgatcggtcttattcattttcagctgaatgtgggatatggcaacgctgttgctattgctggacttagcagtcaaaa |
200 |
Q |
| |
|
|||||||||| || || ||||| ||||| || || |||||||||||||||| || || ||||||||||||||||||||||| ||||| |
|
|
| T |
710763 |
tgtttgtgtttccaattggtctcattcacttccaattgaatgtgggatatggaaatgcagttgctattgctggacttagcagccaaaa |
710676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 94 - 200
Target Start/End: Complemental strand, 717815 - 717709
Alignment:
| Q |
94 |
gtactcaacaagggtgatgtgtttgtgttcccgatcggtcttattcattttcagctgaatgtgggatatggcaacgctgttgctattgctggacttagca |
193 |
Q |
| |
|
||||| ||||| || |||||||||||||| || || ||||| ||||| || || |||||||||||||||| || || |||||||||||||||||||||| |
|
|
| T |
717815 |
gtactaaacaaaggagatgtgtttgtgtttccaattggtctcattcacttccaattgaatgtgggatatggaaatgcagttgctattgctggacttagca |
717716 |
T |
|
| Q |
194 |
gtcaaaa |
200 |
Q |
| |
|
| ||||| |
|
|
| T |
717715 |
gccaaaa |
717709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 712847 - 713031
Alignment:
| Q |
13 |
gagatccttatagtactggaaggtactctttatgttggatttgtcacatcaaatcaagacaacaatcgtctctttaccaaggtactcaacaagggtgatg |
112 |
Q |
| |
|
||||| |||||||| |||| |||||||| ||||| || ||||| || || |||| ||| ||| |||||| |||| || ||||| ||||| || |||| |
|
|
| T |
712847 |
gagattcttatagtgttggagggtactctctatgtcgggtttgttacttctaatccagaaaac---cgtctcattacaaaagtactgaacaaaggagatg |
712943 |
T |
|
| Q |
113 |
tgtttgtgttcccgatcggtcttattcattttcagctgaatgtgggatatggcaacgctgttgctattgctggacttagcagtcaaaa |
200 |
Q |
| |
|
|||||||||| || || || || ||||| ||||| ||||||| || ||||| || || ||||||||||||||||||||||| ||||| |
|
|
| T |
712944 |
tgtttgtgtttccaattggcctcattcactttcaattgaatgttgggtatggaaatgcagttgctattgctggacttagcagccaaaa |
713031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 281
Target Start/End: Original strand, 14437443 - 14437512
Alignment:
| Q |
212 |
tcactgttgcaaatgctttgtttaaatctgatcctcttatttccgacgaagttcttaccaaagcttttca |
281 |
Q |
| |
|
||||| ||||||||||||||||||||||| || | | |||||| || |||||||||| || |||||||| |
|
|
| T |
14437443 |
tcactattgcaaatgctttgtttaaatctaatacacctatttctgaaaaagttcttacgaatgcttttca |
14437512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 29 - 234
Target Start/End: Original strand, 35313548 - 35313753
Alignment:
| Q |
29 |
tggaaggtactctttatgttggatttgtcacatcaaatcaagacaacaatcgtctctttaccaaggtactcaacaagggtgatgtgtttgtgttcccgat |
128 |
Q |
| |
|
||||||| || ||||| ||||||||||| | |||||||||||||| || |||||||| ||||| ||| | ||||| |||||||| |||||||| || || |
|
|
| T |
35313548 |
tggaaggcacactttacgttggatttgtttcctcaaatcaagacaataaccgtctcttcaccaaagtattgaacaaaggtgatgtatttgtgtttccaat |
35313647 |
T |
|
| Q |
129 |
cggtcttattcattttcagctgaatgtgggatatggcaacgctgttgctattgctggacttagcagtcaaaacccaggagttatcactgttgcaaatgct |
228 |
Q |
| |
|
|||||| ||||| || || |||| || || ||||| | ||| |||| |||||||| ||||| || |||||||| ||||| || || ||||||||||| |
|
|
| T |
35313648 |
cggtctcattcacttccaattgaacgttggttatggggaggctattgccattgctggtcttagtagccaaaaccctggagtgattaccattgcaaatgct |
35313747 |
T |
|
| Q |
229 |
ttgttt |
234 |
Q |
| |
|
||||| |
|
|
| T |
35313748 |
gtgttt |
35313753 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1230 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1230
Description:
Target: scaffold1230; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 332
Target Start/End: Complemental strand, 1259 - 1145
Alignment:
| Q |
218 |
ttgcaaatgctttgtttaaatctgatcctcttatttccgacgaagttcttaccaaagcttttcaggtggataagagcataattgattatcttcaaaaaca |
317 |
Q |
| |
|
||||||||||||||||||||||| || | ||||| | ||||||||| ||||| ||||| || || | |||||||||||||||||| |||| || |
|
|
| T |
1259 |
ttgcaaatgctttgtttaaatctacgccgcctatttttcagaaagttcttagcaaagtttttcgagtagactaaagcataattgattatctttaaaagca |
1160 |
T |
|
| Q |
318 |
gtcttggtatgacaa |
332 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
1159 |
gtcttgatatgacaa |
1145 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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