View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4637_high_3 (Length: 317)
Name: NF4637_high_3
Description: NF4637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4637_high_3 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 14 - 317
Target Start/End: Complemental strand, 3684217 - 3683912
Alignment:
| Q |
14 |
gagagggaagtgagcatcctgcgggacctatagaacaacctttcattattatcagataaaaagacaactaa-ttgattcatttcacaactgaataaaaat |
112 |
Q |
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| T |
3684217 |
gagagggaagtgagcatcttgagggacctatagaacaacctttcattattattagataaaaagacaactaaattgattcatttcacaactgaataaaaat |
3684118 |
T |
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| Q |
113 |
taaccttctatttcaataaaagttattacataagcttgtaaagaaaggaaatgaatgatgagtaattaataatcacccatctaataacaataattgataa |
212 |
Q |
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| T |
3684117 |
caaccttctatttcaataaaagttattacataagcttgtaaagaaaggaaatgaatgatgagtaattaataatcacccatctaataacaataattgataa |
3684018 |
T |
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| Q |
213 |
t-nnnnnnnnngacagaaaagactacgaaactctaagcaaattaagacatagaaaataaagataatactattactaatgttgcagatagatatttaatga |
311 |
Q |
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| T |
3684017 |
taaaaaaaaaagttcgaaaagacaacgaaactctaagcaaattaagacatagaaaatatagataatactactactaacgttgcagatagatacttaatga |
3683918 |
T |
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| Q |
312 |
atatct |
317 |
Q |
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| T |
3683917 |
acatct |
3683912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 49 - 317
Target Start/End: Complemental strand, 3702950 - 3702675
Alignment:
| Q |
49 |
caacctttcattattatcagataaaaagacaactaattgattcatttcacaactgaataaaaattaaccttctatttc-aataaaagttattacataagc |
147 |
Q |
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| T |
3702950 |
caacctttcattattattagataaaaaaacaactaactgattcatttcacaattgactaaaaatcaactttttatttcaaataaaaattattacataaac |
3702851 |
T |
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| Q |
148 |
ttgtaaagaaaggaaatgaatgatgagtaattaa-taatcacccatctaataacaataattgat-----aatnnnnnnnnngacagaaaagactacgaaa |
241 |
Q |
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| T |
3702850 |
atgttgagaaagaaaatgaatgatgagaaattaattaatcacccatctgataacaataattgataaaaaaaaaaaaaaaaaaaccgaaaaaactacggaa |
3702751 |
T |
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| Q |
242 |
ctctaagcaaattaagacatagaaaataaagataatactattactaatgttgcagatagatatttaatgaatatct |
317 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||| ||||||||||||| |
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| T |
3702750 |
ctctaagcaaattaagacatagaaaatatagataatactactactaatgttgctgatagatacttaatgaatatct |
3702675 |
T |
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