View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4637_high_4 (Length: 312)
Name: NF4637_high_4
Description: NF4637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4637_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 27522343 - 27522048
Alignment:
| Q |
1 |
cttactacagcagcaacttccaactttgaacatggggtgggtaacatttctataacatatgcattattaattattaaattatgtcacatttaccacttca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
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| T |
27522343 |
cttactacagcagcaacttccaactttgaacatggggtgggtaacatttctataacctatgcattattaatta---aattatgtcacatttaccacttca |
27522247 |
T |
|
| Q |
101 |
attcttgtccttcattagtagttactgatcatagtnnnnnnnnnnntatttgcagtggcaattaccgtgaggaagcaccagaaatggggaggaatgaact |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27522246 |
attcttgtccttcattagtagttactgatcatagtaaaaaaaata-tatttgcagtggcaattaccgtgaggaagcaccagaaatggggaggaatgaact |
27522148 |
T |
|
| Q |
201 |
tgaccttaccctggaaccattgtatacctgccatcttggatgcttttgatgaaaaccttattaaaggtggatggtattatcaatatatatatttagctct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
27522147 |
tgaccttaccctggaaccattgtatacctgccatcttggatgcttttgatgaaaaccttattaaaggtggatggtattatcaatatatatatttggctct |
27522048 |
T |
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