View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4637_high_5 (Length: 310)
Name: NF4637_high_5
Description: NF4637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4637_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 42842105 - 42841797
Alignment:
| Q |
1 |
aaaccgccattgcttgtctttaaaaatggcacaacttaannnnnnnnn---gttgaaacacatgacacattttatgctattcattgaaattcaaataaat |
97 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
42842105 |
aaaccgccattgcttgtctttaaaaatggcacaacttaatttattttttttgttgaaacacatgacacattttatgctattcattgaaattcaaaaaaaa |
42842006 |
T |
|
| Q |
98 |
cttattgttttggaaatgaatctcaccaagttatgtgaaatctatatcaacttcaaataaaagaagagtgttgaagctttataagcaaaatattgaatnn |
197 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42842005 |
attattgttttggaaacgaatctcaccaagttatgtgaaatctatatgaacttcaaataaaagaagagtgttgaagctttataagcaaaatattgaat-t |
42841907 |
T |
|
| Q |
198 |
nnnnnnntgttgaaaatattgttagaaatgtgacgagctatatgtagttcatactatatggatatacgcaagtataattgctttggatgcacatctccaa |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
42841906 |
aaaaaaatgttgaaaatattgttagaaatgtgacgagctatatgtagttcatactatatagatatacgcaagtataattgcttgggatgcacatctccaa |
42841807 |
T |
|
| Q |
298 |
caccaaactc |
307 |
Q |
| |
|
| | |||||| |
|
|
| T |
42841806 |
cccaaaactc |
42841797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University