View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4637_high_8 (Length: 304)
Name: NF4637_high_8
Description: NF4637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4637_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 39558587 - 39558276
Alignment:
| Q |
1 |
ctatgtctgtgattattgtatcgtgtatatggacgacaaattaagcaactcaatcttctcgatgttacacacattttaatttaatttggaaaagctaatt |
100 |
Q |
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| T |
39558587 |
ctatgtctgtgattattgtatcgtgtatatggacgacaaattaagcaactcaatcttctcgatgttacacacattttaatttaatttggaaaagctaatt |
39558488 |
T |
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| Q |
101 |
aa-------------------tttcctgcattgttaaagttttacacacattgcaacaaatatcatgtttgaagtggcaatgataaaaatcaaacacttt |
181 |
Q |
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| T |
39558487 |
aaatgttaataaaagtttaattttcctgcattgttaaagttttacacacattgcaacaaatatcatgtttgaagtggcaatgataaaaatcaaaca-ttt |
39558389 |
T |
|
| Q |
182 |
taatgacgaaaatgttaagattgatagtttaaaaactctttacacaaaaccaaatgattgagctcaattcaagtggttaatgaaccaaccccct-tagcc |
280 |
Q |
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||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
39558388 |
taatgacgaaaatgttatgattgattgtttaaaaactctttacacaaaaccaagtgattgagctcaattcaagtggttaatgaaccaaccccttatagcc |
39558289 |
T |
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| Q |
281 |
ctgtcgaactcca |
293 |
Q |
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||||||||||||| |
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| T |
39558288 |
ctgtcgaactcca |
39558276 |
T |
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