View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4638-Insertion-11 (Length: 329)

Name: NF4638-Insertion-11
Description: NF4638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4638-Insertion-11
NF4638-Insertion-11
[»] chr5 (9 HSPs)
chr5 (8-192)||(10407578-10407761)
chr5 (251-312)||(10407447-10407508)
chr5 (125-195)||(27530608-27530678)
chr5 (125-193)||(35080688-35080756)
chr5 (134-196)||(2530823-2530885)
chr5 (251-311)||(33037767-33037827)
chr5 (125-192)||(11242235-11242302)
chr5 (255-312)||(36868933-36868990)
chr5 (125-196)||(22648654-22648725)
[»] chr2 (6 HSPs)
chr2 (125-196)||(21665620-21665691)
chr2 (128-196)||(16097120-16097188)
chr2 (132-192)||(7742055-7742115)
chr2 (128-192)||(37182760-37182824)
chr2 (131-192)||(11952514-11952575)
chr2 (132-193)||(12694794-12694855)
[»] chr7 (10 HSPs)
chr7 (251-312)||(17800276-17800337)
chr7 (124-196)||(23744909-23744981)
chr7 (125-191)||(26917649-26917715)
chr7 (131-192)||(23859190-23859251)
chr7 (131-196)||(38971365-38971430)
chr7 (131-195)||(12981438-12981502)
chr7 (125-192)||(2611179-2611246)
chr7 (126-196)||(23020404-23020473)
chr7 (147-191)||(9014119-9014163)
chr7 (125-189)||(12419413-12419477)
[»] chr6 (3 HSPs)
chr6 (125-192)||(20611908-20611975)
chr6 (127-192)||(27131120-27131185)
chr6 (131-191)||(30121881-30121941)
[»] chr4 (8 HSPs)
chr4 (125-191)||(24614077-24614143)
chr4 (131-196)||(11906826-11906891)
chr4 (125-196)||(5893130-5893201)
chr4 (125-196)||(30507037-30507108)
chr4 (251-312)||(52468277-52468338)
chr4 (126-192)||(39655172-39655238)
chr4 (136-192)||(36362798-36362854)
chr4 (132-192)||(39329317-39329377)
[»] scaffold0182 (1 HSPs)
scaffold0182 (255-312)||(24053-24110)
[»] chr1 (6 HSPs)
chr1 (131-196)||(45758620-45758685)
chr1 (125-196)||(38853648-38853719)
chr1 (251-312)||(45758491-45758552)
chr1 (125-192)||(38546954-38547021)
chr1 (161-196)||(43235722-43235757)
chr1 (123-192)||(39134636-39134705)
[»] chr8 (12 HSPs)
chr8 (133-192)||(30674330-30674389)
chr8 (128-195)||(34048630-34048697)
chr8 (154-196)||(8103027-8103069)
chr8 (251-312)||(7944578-7944639)
chr8 (132-192)||(41677098-41677158)
chr8 (131-186)||(9108610-9108665)
chr8 (125-196)||(14509899-14509970)
chr8 (138-192)||(34868108-34868162)
chr8 (128-196)||(5942780-5942848)
chr8 (152-196)||(34789808-34789852)
chr8 (251-311)||(34789918-34789978)
chr8 (255-307)||(39332465-39332517)
[»] scaffold0022 (2 HSPs)
scaffold0022 (124-196)||(40201-40273)
scaffold0022 (124-196)||(138261-138333)
[»] scaffold1590 (1 HSPs)
scaffold1590 (141-196)||(193-248)
[»] chr3 (2 HSPs)
chr3 (131-189)||(52973437-52973495)
chr3 (125-193)||(36179476-36179544)
[»] scaffold0012 (1 HSPs)
scaffold0012 (132-196)||(206417-206479)


Alignment Details
Target: chr5 (Bit Score: 157; Significance: 2e-83; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 8 - 192
Target Start/End: Complemental strand, 10407761 - 10407578
Alignment:
Q  8 aaaagaagtatgatattttaaaaagtgttgttttataaaggttctagttggaaaagacttgatgtttaagtggtatattgtcactcacctctctttcatg 107  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10407761 aaaagaagtatgatattataaaa-gtgttgttttataaaggttctagttggaaaagacttaatgtttaagtggtatattgtcactcacctctctttcatg 10407663  T
Q  108 agaatttacctcatgcacagggtcgttcctacgaatctagaggttcggctctataagtgaaaagaggcctataataaaataaaaa 192  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||    
T  10407662 agaatttacctcatgcacagggtcgttcctacgaatctagaggttcggttctataagtgaaaagaggtccataataaaataaaaa 10407578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 251 - 312
Target Start/End: Complemental strand, 10407508 - 10407447
Alignment:
Q  251 tgttgtacatccaaaagtgaaaattattaccgtatgcatgaggaatctccaaccaccatccc 312  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  10407508 tgttgtacatctaaaagtgaaaattactaccgtatgcatgaggaatctccaaccaccatccc 10407447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 125 - 195
Target Start/End: Complemental strand, 27530678 - 27530608
Alignment:
Q  125 cagggtcgttcctacgaatctagaggttcggctctataagtgaaaagaggcctataataaaataaaaatgt 195  Q
    ||||| ||||||||||||| |||||| |||| ||||||||||||||||||||  |||||||||||||||||    
T  27530678 cagggccgttcctacgaatttagaggctcggttctataagtgaaaagaggcccgtaataaaataaaaatgt 27530608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 125 - 193
Target Start/End: Original strand, 35080688 - 35080756
Alignment:
Q  125 cagggtcgttcctacgaatctagaggttcggctctataagtgaaaagaggcctataataaaataaaaat 193  Q
    ||||| |||||||||||||||||||| ||| |||| |||||||||||||| |  |||||||||||||||    
T  35080688 cagggccgttcctacgaatctagaggctcgactctgtaagtgaaaagagggccgtaataaaataaaaat 35080756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 134 - 196
Target Start/End: Original strand, 2530823 - 2530885
Alignment:
Q  134 tcctacgaatctagaggttcggctctataagtgaaaagaggcctataataaaataaaaatgta 196  Q
    ||||||||||||  ||||| |||||| ||||||||||||||||  ||||||||||||||||||    
T  2530823 tcctacgaatctgaaggtttggctctgtaagtgaaaagaggcccgtaataaaataaaaatgta 2530885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 311
Target Start/End: Complemental strand, 33037827 - 33037767
Alignment:
Q  251 tgttgtacatccaaaagtgaaaattattaccgtatgcatgaggaatctccaaccaccatcc 311  Q
    ||||||||| ||||| |||||||  |||||||||| ||||||||| ||| |||||||||||    
T  33037827 tgttgtacacccaaaggtgaaaaccattaccgtatacatgaggaacctcaaaccaccatcc 33037767  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 192
Target Start/End: Original strand, 11242235 - 11242302
Alignment:
Q  125 cagggtcgttcctacgaatctagaggttcggctctataagtgaaaagaggcctataataaaataaaaa 192  Q
    |||||||||||||| |||||  |||| |||||||| ||||||||||||| |   ||||||||||||||    
T  11242235 cagggtcgttcctatgaatccggaggctcggctctgtaagtgaaaagagactcgtaataaaataaaaa 11242302  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 312
Target Start/End: Original strand, 36868933 - 36868990
Alignment:
Q  255 gtacatccaaaagtgaaaattattaccgtatgcatgaggaatctccaaccaccatccc 312  Q
    ||||| ||||| |||||||| | |||||||| ||||||||||||| ||||||| ||||    
T  36868933 gtacacccaaatgtgaaaatcactaccgtatacatgaggaatctcaaaccaccctccc 36868990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 196
Target Start/End: Original strand, 22648654 - 22648725
Alignment:
Q  125 cagggtcgttcctacgaatctagaggttcggctctataagtgaaaagaggcctataat-aaaataaaaatgta 196  Q
    ||||||||||||||||||||  |||  || ||||| |||||||||||| |||| |||| ||||||||||||||    
T  22648654 cagggtcgttcctacgaatccggagactc-gctctgtaagtgaaaagaagcctgtaataaaaataaaaatgta 22648725  T

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Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 125 - 196
Target Start/End: Original strand, 21665620 - 21665691
Alignment:
Q  125 cagggtcgttcctacgaatctagaggttcggctctataagtgaaaagaggcctataataaaataaaaatgta 196  Q
    |||||| |||||||||||||| |||| |||||||| ||||||||||||| ||  ||||||||||||||||||    
T  21665620 cagggttgttcctacgaatctggagggtcggctctgtaagtgaaaagagacccgtaataaaataaaaatgta 21665691  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 128 - 196
Target Start/End: Complemental strand, 16097188 - 16097120
Alignment:
Q  128 ggtcgttcctacgaatctagaggttcggctctataagtgaaaagaggcctataataaaataaaaatgta 196  Q
    |||||||||||||||| | |||| |||||||| ||||||||||| ||||  |||||||||||| |||||    
T  16097188 ggtcgttcctacgaatttggaggctcggctctgtaagtgaaaagtggcccgtaataaaataaatatgta 16097120  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 192
Target Start/End: Original strand, 7742055 - 7742115
Alignment:
Q  132 gttcctacgaatctagaggttcggctctataagtgaaaagaggcctataataaaataaaaa 192  Q
    |||||||||||||  ||||||||| ||| ||||||||||||||||  | ||||||||||||    
T  7742055 gttcctacgaatccggaggttcggttctgtaagtgaaaagaggcccgtgataaaataaaaa 7742115  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 192
Target Start/End: Complemental strand, 37182824 - 37182760
Alignment:
Q  128 ggtcgttcctacgaatctagaggttcggctctataagtgaaaagaggcctataataaaataaaaa 192  Q
    ||||||||||| |||||  |||| |||||||| ||||||||||||| ||  ||||||||||||||    
T  37182824 ggtcgttcctaagaatccggaggctcggctctgtaagtgaaaagagacccgtaataaaataaaaa 37182760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 192
Target Start/End: Original strand, 11952514 - 11952575
Alignment:
Q  131 cgttcctacgaatctagaggttcggctctataagtgaaaagaggcctataataaaataaaaa 192  Q
    |||||||||||||||  ||| |||| ||| ||||||||||||| ||  ||||||||||||||    
T  11952514 cgttcctacgaatctgaaggctcggttctgtaagtgaaaagagacccgtaataaaataaaaa 11952575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 193
Target Start/End: Complemental strand, 12694855 - 12694794
Alignment:
Q  132 gttcctacgaatctagaggttcggctctataagtgaaaagaggcctataataaaataaaaat 193  Q
    |||| ||||||||  |||| |||||||| ||||||||||||| ||  |||||||||||||||    
T  12694855 gttcttacgaatccggaggctcggctctgtaagtgaaaagagacccgtaataaaataaaaat 12694794  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 251 - 312
Target Start/End: Original strand, 17800276 - 17800337
Alignment:
Q  251 tgttgtacatccaaaagtgaaaattattaccgtatgcatgaggaatctccaaccaccatccc 312  Q
    ||||||||| |||||||||||||| | ||||||||||||||||||| || ||||||||||||    
T  17800276 tgttgtacacccaaaagtgaaaatcactaccgtatgcatgaggaatttcaaaccaccatccc 17800337  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 124 - 196
Target Start/End: Complemental strand, 23744981 - 23744909
Alignment:
Q  124 acagggtcgttcctacgaatctagaggttcggctctataagtgaaaagaggcctataataaaataaaaatgta 196  Q
    |||||| ||||||||||||| | |||| || ||||||||||||||||||||||  ||| ||||||||||||||    
T  23744981 acagggccgttcctacgaatttggaggctcagctctataagtgaaaagaggcccgtaaaaaaataaaaatgta 23744909  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 191
Target Start/End: Original strand, 26917649 - 26917715
Alignment:
Q  125 cagggtcgttcctacgaatctagaggttcggctctataagtgaaaagaggcctataataaaataaaa 191  Q
    ||||||||||| |||||||||||||| | | |||| |||||||||||||| |  |||||||||||||    
T  26917649 cagggtcgttcttacgaatctagaggcttgactctgtaagtgaaaagaggtccgtaataaaataaaa 26917715  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 131 - 192
Target Start/End: Complemental strand, 23859251 - 23859190
Alignment:
Q  131 cgttcctacgaatctagaggttcggctctataagtgaaaagaggcctataataaaataaaaa 192  Q
    ||||||||||||| | |||| ||| |||| ||||||||||||| ||| ||||||||||||||    
T  23859251 cgttcctacgaatttggaggctcgactctgtaagtgaaaagagacctgtaataaaataaaaa 23859190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 131 - 196
Target Start/End: Complemental strand, 38971430 - 38971365
Alignment:
Q  131 cgttcctacgaatctagaggttcggctctataagtgaaaagaggcctataataaaataaaaatgta 196  Q
    |||| ||||||||||||||  |||||| | ||||||||||||| ||  ||||||||||||||||||    
T  38971430 cgtttctacgaatctagagactcggctttgtaagtgaaaagagacccgtaataaaataaaaatgta 38971365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 195
Target Start/End: Complemental strand, 12981502 - 12981438
Alignment:
Q  131 cgttcctacgaatctagaggttcggctctataagtgaaaagaggcctataataaaataaaaatgt 195  Q
    ||||||||||||||  ||||||||| ||| || ||||||||||||   |||||||||||||||||    
T  12981502 cgttcctacgaatccggaggttcggttctgtaggtgaaaagaggctcgtaataaaataaaaatgt 12981438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 192
Target Start/End: Original strand, 2611179 - 2611246
Alignment:
Q  125 cagggtcgttcctacgaatctagaggttcggctctataagtgaaaagaggcctataataaaataaaaa 192  Q
    |||||||||||||| |||||  |||| |||| |||  |||||||||||||| | ||||||||||||||    
T  2611179 cagggtcgttcctatgaatccggaggctcggttctgcaagtgaaaagaggcttgtaataaaataaaaa 2611246  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 196
Target Start/End: Original strand, 23020404 - 23020473
Alignment:
Q  126 agggtcgttcctacgaatctagaggttcggctctataagtgaaaagaggcctataataaaataaaaatgta 196  Q
    |||| ||||||||||||||| ||||  ||| ||| |||||||||||||| |  ||||||||||||||||||    
T  23020404 agggccgttcctacgaatctggaggc-cggttctgtaagtgaaaagaggtccgtaataaaataaaaatgta 23020473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 191
Target Start/End: Original strand, 9014119 - 9014163
Alignment:
Q  147 gaggttcggctctataagtgaaaagaggcctataataaaataaaa 191  Q
    |||| ||| |||||||||||||||||||||  |||||||||||||    
T  9014119 gaggctcgactctataagtgaaaagaggcccgtaataaaataaaa 9014163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 189
Target Start/End: Original strand, 12419413 - 12419477
Alignment:
Q  125 cagggtcgttcctacgaatctagaggttcggctctataagtgaaaagaggcctataataaaataa 189  Q
    ||||| |||||||| |||||  |||| |||||| | ||||||||||||||||  |||||||||||    
T  12419413 cagggccgttcctatgaatccggaggctcggctttgtaagtgaaaagaggcccgtaataaaataa 12419477  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 125 - 192
Target Start/End: Complemental strand, 20611975 - 20611908
Alignment:
Q  125 cagggtcgttcctacgaatctagaggttcggctctataagtgaaaagaggcctataataaaataaaaa 192  Q
    |||||||||||||||||||   |||| |||||||| |||||||||||||||| |||| ||||||||||    
T  20611975 cagggtcgttcctacgaattcggaggctcggctctgtaagtgaaaagaggcccataaaaaaataaaaa 20611908  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 192
Target Start/End: Original strand, 27131120 - 27131185
Alignment:
Q  127 gggtcgttcctacgaatctagaggttcggctctataagtgaaaagaggcctataataaaataaaaa 192  Q
    |||||||||| ||||||| ||||| ||  |||||||| |||||||||  || ||||||||||||||    
T  27131120 gggtcgttccaacgaatccagaggctcaactctataaatgaaaagagatctgtaataaaataaaaa 27131185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 191
Target Start/End: Complemental strand, 30121941 - 30121881
Alignment:
Q  131 cgttcctacgaatctagaggttcggctctataagtgaaaagaggcctataataaaataaaa 191  Q
    ||||| ||||||| | |||||| ||||||||||||||||| ||||   |||||||||||||    
T  30121941 cgttcatacgaatatggaggttgggctctataagtgaaaataggctcgtaataaaataaaa 30121881  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 125 - 191
Target Start/End: Complemental strand, 24614143 - 24614077
Alignment:
Q  125 cagggtcgttcctacgaatctagaggttcggctctataagtgaaaagaggcctataataaaataaaa 191  Q
    ||||| ||||| ||||||||| ||||||| ||||| ||||||||||||||||  |||||||||||||    
T  24614143 cagggccgttcttacgaatctggaggttcagctctgtaagtgaaaagaggcccgtaataaaataaaa 24614077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 196
Target Start/End: Original strand, 11906826 - 11906891
Alignment:
Q  131 cgttcctacgaatctagaggttcggctctataagtgaaaagaggcctataataaaataaaaatgta 196  Q
    |||||||||||||   |||| |||||| ||||||||||||||||||  ||||||||||||||||||    
T  11906826 cgttcctacgaattcggaggctcggctatataagtgaaaagaggcccgtaataaaataaaaatgta 11906891  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 196
Target Start/End: Complemental strand, 5893201 - 5893130
Alignment:
Q  125 cagggtcgttcctacgaatctagaggttcggctctataagtgaaaagaggcctataataaaataaaaatgta 196  Q
    ||||| ||||||||| ||| | |||| |||||||| |||||||||||||| |  ||||||||||||||||||    
T  5893201 cagggccgttcctacaaatttggaggctcggctctgtaagtgaaaagaggtccgtaataaaataaaaatgta 5893130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 196
Target Start/End: Original strand, 30507037 - 30507108
Alignment:
Q  125 cagggtcgttcctacgaatctagaggttcggctctataagtgaaaagaggcctataataaaataaaaatgta 196  Q
    ||||||||||||||||||||  |||| |||  | | ||||||||||||| || |||||||||||||||||||    
T  30507037 cagggtcgttcctacgaatccggaggctcgattttgtaagtgaaaagagacccataataaaataaaaatgta 30507108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 312
Target Start/End: Complemental strand, 52468338 - 52468277
Alignment:
Q  251 tgttgtacatccaaaagtgaaaattattaccgtatgcatgaggaatctccaaccaccatccc 312  Q
    |||| |||||||||| |||||||| | |||||||||||||||||| ||| ||||||| ||||    
T  52468338 tgttatacatccaaaggtgaaaatcactaccgtatgcatgaggaacctcaaaccaccttccc 52468277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 192
Target Start/End: Original strand, 39655172 - 39655238
Alignment:
Q  126 agggtcgttcctacgaatctagaggttcggctctataagtgaaaagaggcctataataaaataaaaa 192  Q
    |||||||||||||| ||||| |||| ||| |||| || ||||||||||||   ||||||||||||||    
T  39655172 agggtcgttcctacaaatctggaggctcgactctgtaggtgaaaagaggctcgtaataaaataaaaa 39655238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 192
Target Start/End: Original strand, 36362798 - 36362854
Alignment:
Q  136 ctacgaatctagaggttcggctctataagtgaaaagaggcctataataaaataaaaa 192  Q
    |||||||||||||||   | |||| ||||||||||||| || |||||||||||||||    
T  36362798 ctacgaatctagaggcctgactctgtaagtgaaaagagacccataataaaataaaaa 36362854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 192
Target Start/End: Original strand, 39329317 - 39329377
Alignment:
Q  132 gttcctacgaatctagaggttcggctctataagtgaaaagaggcctataataaaataaaaa 192  Q
    |||||||||||| | |||| |||| ||| |||||||||||||| |  ||||||||||||||    
T  39329317 gttcctacgaatttggaggctcggttctgtaagtgaaaagaggtccgtaataaaataaaaa 39329377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 255 - 312
Target Start/End: Original strand, 24053 - 24110
Alignment:
Q  255 gtacatccaaaagtgaaaattattaccgtatgcatgaggaatctccaaccaccatccc 312  Q
    ||||| |||||||||||||| |||||||||||||| ||||||||| ||||||| ||||    
T  24053 gtacacccaaaagtgaaaatcattaccgtatgcataaggaatctcaaaccaccctccc 24110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 196
Target Start/End: Complemental strand, 45758685 - 45758620
Alignment:
Q  131 cgttcctacgaatctagaggttcggctctataagtgaaaagaggcctataataaaataaaaatgta 196  Q
    |||||||||||||| ||||| |||||||| |||||||||||||| |   |||||||||||||||||    
T  45758685 cgttcctacgaatccagaggctcggctctgtaagtgaaaagaggtccgaaataaaataaaaatgta 45758620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 196
Target Start/End: Complemental strand, 38853719 - 38853648
Alignment:
Q  125 cagggtcgttcctacgaatctagaggttcggctctataagtgaaaagaggcctataataaaataaaaatgta 196  Q
    |||||||||| |||||||   ||||  |||||||||||||||||| |||||  |||||||||||||||||||    
T  38853719 cagggtcgtttctacgaaatcagagactcggctctataagtgaaatgaggcacataataaaataaaaatgta 38853648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 312
Target Start/End: Complemental strand, 45758552 - 45758491
Alignment:
Q  251 tgttgtacatccaaaagtgaaaattattaccgtatgcatgaggaatctccaaccaccatccc 312  Q
    |||| |||||||||| |||||||| | |||||||| ||||||||| ||| ||||||||||||    
T  45758552 tgttatacatccaaaggtgaaaatcactaccgtatacatgaggaacctcaaaccaccatccc 45758491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 192
Target Start/End: Original strand, 38546954 - 38547021
Alignment:
Q  125 cagggtcgttcctacgaatctagaggttcggctctataagtgaaaagaggcctataataaaataaaaa 192  Q
    ||||| ||||||||||||| | |||| ||||||||  |||||||||| ||||  ||||||||||||||    
T  38546954 cagggccgttcctacgaatttggaggatcggctctgcaagtgaaaaggggcccgtaataaaataaaaa 38547021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 161 - 196
Target Start/End: Original strand, 43235722 - 43235757
Alignment:
Q  161 taagtgaaaagaggcctataataaaataaaaatgta 196  Q
    ||||||||||||||||| ||||||||||||||||||    
T  43235722 taagtgaaaagaggcctgtaataaaataaaaatgta 43235757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 192
Target Start/End: Original strand, 39134636 - 39134705
Alignment:
Q  123 cacagggtcgttcctacgaatctagaggttcggctctataagtgaaaagaggcctataataaaataaaaa 192  Q
    ||||||| ||||||||||||||  |||| |||||||  ||||||||||||| |   ||||||||||||||    
T  39134636 cacagggccgttcctacgaatccggaggctcggctccgtaagtgaaaagagactcgtaataaaataaaaa 39134705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 192
Target Start/End: Original strand, 30674330 - 30674389
Alignment:
Q  133 ttcctacgaatctagaggttcggctctataagtgaaaagaggcctataataaaataaaaa 192  Q
    ||||||||||||| |||| |||||||| |||||||||||||||   ||||||||||||||    
T  30674330 ttcctacgaatctggaggctcggctctgtaagtgaaaagaggctcgtaataaaataaaaa 30674389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 128 - 195
Target Start/End: Original strand, 34048630 - 34048697
Alignment:
Q  128 ggtcgttcctacgaatctagaggttcggctctataagtgaaaagaggcctataataaaataaaaatgt 195  Q
    |||||||||||||||| | |||| |||||||| |||||||||| || ||  |||||||||||||||||    
T  34048630 ggtcgttcctacgaatttggaggctcggctctgtaagtgaaaatagacccgtaataaaataaaaatgt 34048697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 196
Target Start/End: Complemental strand, 8103069 - 8103027
Alignment:
Q  154 ggctctataagtgaaaagaggcctataataaaataaaaatgta 196  Q
    |||||| ||| ||||||||||||||||||||||||||||||||    
T  8103069 ggctctgtaaatgaaaagaggcctataataaaataaaaatgta 8103027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 312
Target Start/End: Original strand, 7944578 - 7944639
Alignment:
Q  251 tgttgtacatccaaaagtgaaaattattaccgtatgcatgaggaatctccaaccaccatccc 312  Q
    ||||||||| ||||| |||||||| | |||||||| ||||||||| ||| ||||||||||||    
T  7944578 tgttgtacacccaaaggtgaaaatcactaccgtatacatgaggaacctcaaaccaccatccc 7944639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 192
Target Start/End: Original strand, 41677098 - 41677158
Alignment:
Q  132 gttcctacgaatctagaggttcggctctataagtgaaaagaggcctataataaaataaaaa 192  Q
    ||||||||||||   |||| |||||||| | ||||||||||| ||||||||||||||||||    
T  41677098 gttcctacgaattcggaggctcggctctgtgagtgaaaagagacctataataaaataaaaa 41677158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 131 - 186
Target Start/End: Complemental strand, 9108665 - 9108610
Alignment:
Q  131 cgttcctacgaatctagaggttcggctctataagtgaaaagaggcctataataaaa 186  Q
    |||||||| ||||| ||||||| || ||| |||||||||||||| |||||||||||    
T  9108665 cgttcctatgaatcaagaggtttggttctgtaagtgaaaagaggtctataataaaa 9108610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 196
Target Start/End: Original strand, 14509899 - 14509970
Alignment:
Q  125 cagggtcgttcctacgaatctagaggttcggctctataagtgaaaagaggcctataataaaataaaaatgta 196  Q
    |||| |||||||||||||| | ||| ||||| |||  ||||||||| |||||  ||||||||||||||||||    
T  14509899 caggatcgttcctacgaatttggagattcggttctgcaagtgaaaataggcccgtaataaaataaaaatgta 14509970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 34868108 - 34868162
Alignment:
Q  138 acgaatctagaggttcggctctataagtgaaaagaggcctataataaaataaaaa 192  Q
    |||||||| |||| |||||||  ||||||||||||| || |||||||||||||||    
T  34868108 acgaatctcgaggctcggctccgtaagtgaaaagagacccataataaaataaaaa 34868162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 196
Target Start/End: Complemental strand, 5942848 - 5942780
Alignment:
Q  128 ggtcgttcctacgaatctagaggttcggctctataagtgaaaagaggcctataataaaataaaaatgta 196  Q
    |||||||||||||||||  || | |||  ||| |||||||||||||| |  ||||||||||||||||||    
T  5942848 ggtcgttcctacgaatccggaagctcgattctgtaagtgaaaagaggaccgtaataaaataaaaatgta 5942780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 196
Target Start/End: Original strand, 34789808 - 34789852
Alignment:
Q  152 tcggctctataagtgaaaagaggcctataataaaataaaaatgta 196  Q
    ||||||||||||||||||| ||| |  ||||||||||||||||||    
T  34789808 tcggctctataagtgaaaaaaggtccgtaataaaataaaaatgta 34789852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 311
Target Start/End: Original strand, 34789918 - 34789978
Alignment:
Q  251 tgttgtacatccaaaagtgaaaattattaccgtatgcatgaggaatctccaaccaccatcc 311  Q
    ||||||||| ||||| |||||||| | |||||||| |||||| ||| || |||||||||||    
T  34789918 tgttgtacacccaaaggtgaaaatcactaccgtatacatgagaaatatcaaaccaccatcc 34789978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 307
Target Start/End: Original strand, 39332465 - 39332517
Alignment:
Q  255 gtacatccaaaagtgaaaattattaccgtatgcatgaggaatctccaaccacc 307  Q
    ||||||||||| |||||||| | |||||||| ||||||||| ||| |||||||    
T  39332465 gtacatccaaaggtgaaaatcactaccgtatacatgaggaacctcaaaccacc 39332517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 196
Target Start/End: Complemental strand, 40273 - 40201
Alignment:
Q  124 acagggtcgttcctacgaatctagaggttcggctctataagtgaaaagaggcctataataaaataaaaatgta 196  Q
    ||||||||| ||||  |||||| ||||||| ||||| ||||||||||||||    ||||||||||||||||||    
T  40273 acagggtcgatcctgtgaatctggaggttctgctctgtaagtgaaaagaggttcgtaataaaataaaaatgta 40201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 196
Target Start/End: Complemental strand, 138333 - 138261
Alignment:
Q  124 acagggtcgttcctacgaatctagaggttcggctctataagtgaaaagaggcctataataaaataaaaatgta 196  Q
    ||||||||| ||||  |||||| ||||||| ||||| ||||||||||||||    ||||||||||||||||||    
T  138333 acagggtcgatcctgtgaatctggaggttctgctctgtaagtgaaaagaggttcgtaataaaataaaaatgta 138261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1590 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold1590
Description:

Target: scaffold1590; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 141 - 196
Target Start/End: Original strand, 193 - 248
Alignment:
Q  141 aatctagaggttcggctctataagtgaaaagaggcctataataaaataaaaatgta 196  Q
    |||| ||||| ||||||||  ||||||| ||||||| |||||||||||||||||||    
T  193 aatccagaggctcggctctgcaagtgaatagaggcccataataaaataaaaatgta 248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 189
Target Start/End: Complemental strand, 52973495 - 52973437
Alignment:
Q  131 cgttcctacgaatctagaggttcggctctataagtgaaaagaggcctataataaaataa 189  Q
    ||||||||||||| |||||| |||  ||| |||| ||||||||||| ||||||||||||    
T  52973495 cgttcctacgaatttagaggctcgattctgtaagagaaaagaggcccataataaaataa 52973437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 193
Target Start/End: Original strand, 36179476 - 36179544
Alignment:
Q  125 cagggtcgttcctacgaatctagaggttcggctctataagtgaaaagaggcctataataaaataaaaat 193  Q
    ||||| ||||||||||||||  |||| | ||  | |||||||||||||||||  |||||||||||||||    
T  36179476 cagggccgttcctacgaatccggaggcttggtcccataagtgaaaagaggcccgtaataaaataaaaat 36179544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 196
Target Start/End: Original strand, 206417 - 206479
Alignment:
Q  132 gttcctacgaatctagaggttcggctctataagtgaaaagaggcctataataaaataaaaatgta 196  Q
    |||||||||||||  ||||  ||||||| ||||||||||||||  | ||||||||||||||||||    
T  206417 gttcctacgaatcctgagg--cggctctgtaagtgaaaagaggtttgtaataaaataaaaatgta 206479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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