View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4638-Insertion-12 (Length: 321)

Name: NF4638-Insertion-12
Description: NF4638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4638-Insertion-12
NF4638-Insertion-12
[»] chr5 (1 HSPs)
chr5 (31-321)||(12153423-12153703)


Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 31 - 321
Target Start/End: Original strand, 12153423 - 12153703
Alignment:
Q  31 atattatcgtcacttaatgattagtcatatagcaaactcttattacattagaacgtgtataatggactctcatttgaaaggattaagttaaaaatggtaa 130  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||||||||    |||||| ||||||||||||||||||||||||||||||||||||    
T  12153423 atattatcgtcacttaatgattagtcctgtagcaaactcttattacattagaa----tataatcgactctcatttgaaaggattaagttaaaaatggtaa 12153518  T
Q  131 gagaaaaaacttaaattgtt--tgtatgttttgagcactaaaaacttacttgtagcttgtatgcttgttggacttggattccgaattttaattattggtt 228  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||    
T  12153519 gagaaaaaacttaaattgtttgtgtatgttttgagcactaaaaacttacttgtagcttgtat--------gacttggattccgaattttaattattggtt 12153610  T
Q  229 tcaccctcgatctcaatgtatctacacgacttaaatctttagagcctattacgaaattattttcaagttaatattgggaaatcagtttcatta 321  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  12153611 tcaccctcgatctcaatgtatctacacgacttagatctttagagcctattacgagattattttcaagttaatattgggaaatcagtttcatta 12153703  T

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