View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4638-Insertion-2 (Length: 788)
Name: NF4638-Insertion-2
Description: NF4638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4638-Insertion-2 |
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| [»] chr2 (7 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 398; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 291 - 788
Target Start/End: Original strand, 15275291 - 15275775
Alignment:
| Q |
291 |
gaacacacaaagtctctcttttattcctctctctttgttgcatgacgaccacggtgtacagaaccttagaactcgacattatttccgcaaaagatctaaa |
390 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15275291 |
gaacacacaaaatctctcttttattcctctctctttgttgcatgatgaccacggtgtacagaaccttagaactcgacattatttccgcaaaagatctaaa |
15275390 |
T |
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| Q |
391 |
agatgttaatcttttcccccagatgtccgtatacgccattgtttcaatcctcggtgacccactcaacccacaaatcaccaccacccacatccaccgtcac |
490 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15275391 |
agatgttaatcttttctcccagatgtccgtatacgccattgtttcaatcctcggcgacccactcaacccacaaatcaccaccacccacatccaccgtcat |
15275490 |
T |
|
| Q |
491 |
gctggaataaaccccacatggaacatcccggtcaagtttgctgtcaacgaatctctcgcttactataatcgtctctctcttgaagtcaaactcatctcct |
590 |
Q |
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||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15275491 |
gctggaagaaaccccacatggaacatcccggtcaagttcgctgtcaacgaatctctcgcttactataatcgtctctctcttgaagtcaaactcatctcct |
15275590 |
T |
|
| Q |
591 |
atcgaaaattcctcccaaaattcctcccatgcagtaccattggcaaggtccgtatccctctcaaggggacttcttgataaccctgccaatgccggtttcc |
690 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
15275591 |
atcg------------aaaattcctcccatgcagtaccattggcaaggtccgtatccctctcaa-gggacttcttgataaccctgccaatgccggtttcc |
15275677 |
T |
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| Q |
691 |
aactcagttatcgggttaggaaaaaacgctctcggaaatccaagggtacctttaaacctctcctacaaattcggtgatcg-tttttatgctcaggtgac |
788 |
Q |
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| T |
15275678 |
aactcagttatcaggttaggaaaaaacgctctcggaaatccaagggtacc-ttaaacctctcctacaaatttggtgatcgttttttatgctcaggtgac |
15275775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 8 - 223
Target Start/End: Original strand, 15275008 - 15275225
Alignment:
| Q |
8 |
ataacaggaaacttctattcttgaaaaaggaaggagtgagtgtataagatcaggatttggaatgttaaattaccaacgagataggaatgatacttgaata |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
15275008 |
ataacaggaaacttctattcttgaaaaaggaaggagtgagtgtataagatcaggatttggaatgttaaattaccaacgagataggaataatacttgaata |
15275107 |
T |
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| Q |
108 |
ctcaaattgtaaagcagatactgcttgtaaataataaaacaggtacctacttcccctaaacct--aggtttcctatacaattatcttctccttccaactc |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
15275108 |
ctcaaattgtaaagcagatactgcttgtaaataataaaacaggtacctacttcccctaaacctggaggtttcctatacaattatcttctccttccaactc |
15275207 |
T |
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| Q |
206 |
tcacgttataaatacact |
223 |
Q |
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|||||||||||||||||| |
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| T |
15275208 |
tcacgttataaatacact |
15275225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 318 - 761
Target Start/End: Original strand, 15263686 - 15264112
Alignment:
| Q |
318 |
tctctctttgttgcatgacgaccacggtgtacagaaccttagaactcgacattatttccgcaaaagatctaaaagatgttaatcttttcccccagatgtc |
417 |
Q |
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||||||| |||||||||| |||||| ||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||| ||||||| || || || |
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| T |
15263686 |
tctctctctgttgcatgatgaccaccgtgtacagaaccttagaactcaacatgatttccgcaaaagatctcaaagatgttaatattttcccacaaatatc |
15263785 |
T |
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| Q |
418 |
cgtatacgccattgtttcaatcctcggtgacccactcaacccacaaatcaccaccacccacatccaccgtcacgctggaataaaccccacatggaacatc |
517 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||| ||| |||| | |||||||||||| |
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| T |
15263786 |
tgtatacgccattgtttcaatcctcggtgacccactcgacccacaaat---caccacccacatccactgtcacgctagaagaaacgctacatggaacatc |
15263882 |
T |
|
| Q |
518 |
ccggtcaagtttgctgtcaacgaatctctcgcttactataatcgtctctctcttgaagtcaaactcatctcctatcgaaaattcctcccaaaattcctcc |
617 |
Q |
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|| ||||||| || ||||| |||||||||| ||| |||||||||||||||| ||| |||||||||| |||||||| ||||||||||| |
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| T |
15263883 |
cccatcaagttcgccgtcaaggaatctctcgtctaccataatcgtctctctctcgaaatcaaactcatttcctatcg------------aaaattcctcc |
15263970 |
T |
|
| Q |
618 |
catgcagtaccattggcaaggtccgtatccctctcaaggggacttcttgataaccctgccaatgccggtttccaactcagttatcgggttaggaaaaaac |
717 |
Q |
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| T |
15263971 |
cacgcagtaccattggcaaggtccgtatccctctc-ttgggacttcttgataactctgcctatgccggtcatccattcagttatcaagttaggaaaaaac |
15264069 |
T |
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| Q |
718 |
gctctcggaaatccaagggtacctttaaacctctcctacaaatt |
761 |
Q |
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| T |
15264070 |
gctctgggaaatccaagggtacc-ataaacctctcttacaaatt |
15264112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 348 - 607
Target Start/End: Original strand, 15251202 - 15251464
Alignment:
| Q |
348 |
acagaaccttagaactcgacattatttccgcaaaagatctaaaagatgttaatcttttcccccagatgtccgtatacgccattgtttcaatcctcggtga |
447 |
Q |
| |
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|||||||||||||||| |||| || | ||||||||||| |||| | ||||||||||| || ||| ||| ||||| ||| ||||||||||| ||| || |
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| T |
15251202 |
acagaaccttagaacttaacataatatgtgcaaaagatctcaaaggttttaatcttttctccaagacgtcggtatatgccgttgtttcaatctccggcga |
15251301 |
T |
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| Q |
448 |
cccactcaacccacaaatcaccaccacccacatccaccgtcac---gctggaataaaccccacatggaacatcccggtcaagtttgctgtcaacgaatct |
544 |
Q |
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|| | |||||||||||| |||||||||| ||||||| ||| || ||||||| ||||||||||||||||||||| |||||||| ||||| |||||| |
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| T |
15251302 |
ccaaatcaacccacaaaccaccaccacctacatccatcgtaacactgctggaagaaaccccacatggaacatccccgtcaagttcatcgtcaatgaatct |
15251401 |
T |
|
| Q |
545 |
ctcgcttactataatcgtctctctcttgaagtcaaactcatctcctatcgaaaattcctccca |
607 |
Q |
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| T |
15251402 |
ctcgccaaccagaattgcctctctctcgaagtcaaactcctctcccgtcgaaaattcctccca |
15251464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 350 - 594
Target Start/End: Complemental strand, 14431527 - 14431283
Alignment:
| Q |
350 |
agaaccttagaactcgacattatttccgcaaaagatctaaaagatgttaatcttttcccccagatgtccgtatacgccattgtttcaatcctcggtgacc |
449 |
Q |
| |
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||||||||||||||| |||| || ||||| |||||||| ||| |||||||||||||| || ||||| ||| |||||| | ||||||||| || || | |
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| T |
14431527 |
agaaccttagaactcaacatcatatccgctaaagatctcaaaaatgttaatcttttctccaagatggacgtttacgccgtcgtttcaatctcaggcgatc |
14431428 |
T |
|
| Q |
450 |
cactcaacccacaaatcaccaccacccacatccaccgtcacgctggaataaaccccacatggaacatcccggtcaagtttgctgtcaacgaatctctcgc |
549 |
Q |
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|| | |||||||||| |||||||||||| || ||| ||| ||||| || ||| ||||||||| |||| ||||| || | ||||||| |||||||| |
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| T |
14431427 |
cattaaacccacaaactgccaccacccacaggcatcgtgacggtggaacaagccctacatggaacttccccgtcaaattcaccatcaacgattctctcgc |
14431328 |
T |
|
| Q |
550 |
ttactataatcgtctctctcttgaagtcaaactcatctcctatcg |
594 |
Q |
| |
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| || | |||||||||||||| || ||||||||||||||| |||| |
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| T |
14431327 |
taaccagaatcgtctctctctcgaggtcaaactcatctccgatcg |
14431283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 10 - 94
Target Start/End: Original strand, 15250917 - 15251005
Alignment:
| Q |
10 |
aacaggaaacttctattcttgaaaaaggaaggagtgagtgta----taagatcaggatttggaatgttaaattaccaacgagataggaa |
94 |
Q |
| |
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|||||||||||||||| ||||||||||||||||| |||| || ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
15250917 |
aacaggaaacttctatgcttgaaaaaggaaggagggagtctaaaattaagatcaggatttggaatactaaattaccaacgagataggaa |
15251005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 643 - 771
Target Start/End: Complemental strand, 27155791 - 27155665
Alignment:
| Q |
643 |
tatccctctcaaggggacttcttgataaccctgccaatgccggtttccaactcagttatcgggttaggaaaaaacgctctcggaaatccaagggtacctt |
742 |
Q |
| |
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|||||||||||||| |||||||||||||||||| ||| || |||||||||||| | |||||||||||||| ||||| ||||||| ||||| ||| |
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| T |
27155791 |
tatccctctcaagga-acttcttgataaccctgctgctgctggccaccaactcagttaccaggttaggaaaaaaccctctcacaaatccaggggtagctt |
27155693 |
T |
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| Q |
743 |
taaacctctcctacaaattcggtgatcgt |
771 |
Q |
| |
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|||||||||||||||||| ||||||||| |
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| T |
27155692 |
-aaacctctcctacaaatttggtgatcgt |
27155665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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