View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4638-Insertion-4 (Length: 710)

Name: NF4638-Insertion-4
Description: NF4638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4638-Insertion-4
NF4638-Insertion-4
[»] chr4 (1 HSPs)
chr4 (8-710)||(50386463-50387169)


Alignment Details
Target: chr4 (Bit Score: 630; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 630; E-Value: 0
Query Start/End: Original strand, 8 - 710
Target Start/End: Complemental strand, 50387169 - 50386463
Alignment:
Q  8 ttcatttcagataaaggaaaaaagatacaatgatttcttcaagnnnnnnnnnnnnnn--tacaagaatgatcaatcatgtcaaccacaacgataattttc 105  Q
    |||||||||||||||||||||||||||||||||||||||||||                |||||||||||||||||||||||||||||||||||||||||    
T  50387169 ttcatttcagataaaggaaaaaagatacaatgatttcttcaagaaaaagaaaaaaaaaatacaagaatgatcaatcatgtcaaccacaacgataattttc 50387070  T
Q  106 atcactttattattaaaacctagctaaaaatccctaggatcaacaaacacattcccgagttgtctcttcatcacctccaccaattcatcattttcatcat 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50387069 atcactttattattaaaacctagctaaaaatccctaggatcaacaaacacattcccgagttgtctcttcatcacctccaccaattcatcattttcatcat 50386970  T
Q  206 cactgttatttccaagtctttttgtgtaccacatatcatcaatacacgacatagaatcaattttaggaacatagtttacaagtggatcaccaaaccctaa 305  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  50386969 cactgtgatttccaagtctttttgtgtaccacatatcatcaatacacgacatagaatcaattttaggaacatggtttacaagtggatcaccaaaccctaa 50386870  T
Q  306 ctcagttataacaaccctacactcctttaatttttctcctaatcttgatgtaaacctccatattgattccattagcccaccaagattctctccctctcca 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50386869 ctcagttataacaaccctacactcctttaatttttctcctaatcttgatgtaaacctccatattgattccattagcccaccaagattctctccctctcca 50386770  T
Q  406 tgaagtccataaagaaaaagaaaccc-aaatgtactgttgttacacattgagtcaaacattctcaaacaa-ggacatattttgtcctttgcatgatttaa 503  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  50386769 tgaagtccataaagaaaaagaaacccaaaatgtactgttgttacacattgagtcaaacattctcaaacaagggacatattttgtcctttgcatgatttaa 50386670  T
Q  504 tgtcgcatgaagaaacctaagtggttgaaataattttgttttaacttgaaggttattgtcacaagcttcacaagtattccataaactgaaaatgatccat 603  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50386669 tgtcgcatgaagaaacctaagtggttgaaataattttgttttaacttgaaggttattgtcacaagcttcacaagtattccataaactgaaaatgatccat 50386570  T
Q  604 gatgagcttgttgtacttttatgggtaataatgtcttcaatgttgagtttgaagccttcatctttgtaataactaacccaagttcctaggctgagttttt 703  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50386569 gatgagcttgttgtacttttatgggtaataatgtcttcaatgttgagtttgaagccttcatctttgtaataactaacccaagttcctaggctgagttttt 50386470  T
Q  704 ctttgag 710  Q
    |||||||    
T  50386469 ctttgag 50386463  T

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