View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4638-Insertion-6 (Length: 648)

Name: NF4638-Insertion-6
Description: NF4638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4638-Insertion-6
NF4638-Insertion-6
[»] chr2 (7 HSPs)
chr2 (15-431)||(33858439-33858853)
chr2 (513-648)||(33422476-33422610)
chr2 (70-130)||(33858799-33858859)
chr2 (23-65)||(33422618-33422660)
chr2 (86-126)||(33422618-33422658)
chr2 (148-227)||(11272549-11272628)
chr2 (163-227)||(13016037-13016101)
[»] chr8 (4 HSPs)
chr8 (146-228)||(36404050-36404132)
chr8 (146-214)||(37269843-37269911)
chr8 (148-214)||(42941259-42941325)
chr8 (160-214)||(9936427-9936481)
[»] scaffold0760 (1 HSPs)
scaffold0760 (146-214)||(1722-1790)
[»] chr4 (3 HSPs)
chr4 (148-234)||(16989625-16989712)
chr4 (148-214)||(2282262-2282328)
chr4 (431-480)||(16989885-16989933)
[»] chr6 (3 HSPs)
chr6 (148-234)||(2920915-2921002)
chr6 (148-234)||(18246525-18246612)
chr6 (146-228)||(32548928-32549009)
[»] chr7 (2 HSPs)
chr7 (148-215)||(31234744-31234811)
chr7 (160-214)||(42460101-42460155)
[»] chr3 (3 HSPs)
chr3 (148-234)||(1259272-1259359)
chr3 (148-234)||(37242560-37242647)
chr3 (148-234)||(53553630-53553716)
[»] chr1 (2 HSPs)
chr1 (160-214)||(32774127-32774181)
chr1 (153-221)||(46594856-46594924)
[»] chr5 (1 HSPs)
chr5 (169-214)||(40296118-40296163)


Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 15 - 431
Target Start/End: Complemental strand, 33858853 - 33858439
Alignment:
Q  15 catatggaaacaccataaatgattatttaagaaagcaaatcatccaaactttaataaaaaccatatggaagcaccataaatgattatttaagaaagcaaa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33858853 catatggaaacaccataaatgattatttaagaaagcaaatcatccaaactttaataaaaaccatatggaagcaccataaatgattatttaagaaagcaaa 33858754  T
Q  115 tcatccaaactttaattgacttgatgattatttaagaaagcttccttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaa 214  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  33858753 tcatccaaactttaattggcttgatgattatttaagaaagcttccttcctcttatatgagtggacttggaatcctcgagaatgtctaaatagaagatgaa 33858654  T
Q  215 cgtggctgttttttgaatctactaagggagttgggtttggttcggctccttgaagctgttgctgcaggtgnnnnnnnnggctggtccggttttaaggggg 314  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||    
T  33858653 cgtggctgtttttttaatctactaagggagttgggtttggttcggctccttgaagctgttgctgcaggtg--ttttttggctggtccggttttaaggggg 33858556  T
Q  315 g-tttttgtatagcttctgttttggtgattggctttgtccgcgcctcccttgtaactgtgcnnnnnnnnnnctgcttgttctttgcttctgctgtgtttt 413  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           || ||||||||||||||||||||||||||    
T  33858555 gttttttgtatagcttctgttttggtgattggctttgtccgcgcctcccttgtaactgtg-tgctttttttctacttgttctttgcttctgctgtgtttt 33858457  T
Q  414 gtaacagaaggcaggact 431  Q
    ||||||||||||||||||    
T  33858456 gtaacagaaggcaggact 33858439  T

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Target: chr2; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 513 - 648
Target Start/End: Complemental strand, 33422610 - 33422476
Alignment:
Q  513 ttggcttgatgatatgtcgctaatgggaaaaataactttacttccagctgaagccttctttgtctgccatctcacaggaatttttctatatctgtggtca 612  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  33422610 ttggcttgatgatatgtcgctaatgggaaaaataactttacttccagctgaagccttctttgtctgccatctcacaggaatttttctatatttgtggtca 33422511  T
Q  613 atgtttgctttgggcacagcaacaataactgtatct 648  Q
    ||| ||||||| ||||||||| ||||||||||||||    
T  33422510 atg-ttgcttttggcacagcaccaataactgtatct 33422476  T

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Target: chr2; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 33858859 - 33858799
Alignment:
Q  70 aaaaaccatatggaagcaccataaatgattatttaagaaagcaaatcatccaaactttaat 130  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  33858859 aaaaaccatatggaaacaccataaatgattatttaagaaagcaaatcatccaaactttaat 33858799  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 65
Target Start/End: Complemental strand, 33422660 - 33422618
Alignment:
Q  23 aacaccataaatgattatttaagaaagcaaatcatccaaactt 65  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  33422660 aacaccataaacgattatttaagaaagcaaatcatccaaactt 33422618  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 33422658 - 33422618
Alignment:
Q  86 caccataaatgattatttaagaaagcaaatcatccaaactt 126  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  33422658 caccataaacgattatttaagaaagcaaatcatccaaactt 33422618  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 148 - 227
Target Start/End: Original strand, 11272549 - 11272628
Alignment:
Q  148 aagaaagcttccttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaacgtggctgttttt 227  Q
    |||| |||||| |||||||| |||||||| ||||||| |||| |||| || | ||||||||||||||||  |||||||||    
T  11272549 aagatagcttctttcctcttctatgagtgaacttggattcctagagagtgcccaaatagaagatgaacgacgctgttttt 11272628  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 163 - 227
Target Start/End: Complemental strand, 13016101 - 13016037
Alignment:
Q  163 ctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaacgtggctgttttt 227  Q
    ||||| ||||||||||||||||||||  |||| || || ||||||||||||| |  |||||||||    
T  13016101 ctcttttatgagtggacttggaatccgagagagtgccttaatagaagatgaatggtgctgttttt 13016037  T

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Target: chr8 (Bit Score: 55; Significance: 3e-22; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 146 - 228
Target Start/End: Complemental strand, 36404132 - 36404050
Alignment:
Q  146 ttaagaaagcttccttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaacgtggctgtttttt 228  Q
    |||||| ||||||||||||||| || |||||||||||||||||| |||||||| ||||||||||||||| ||| |||||||||    
T  36404132 ttaagatagcttccttcctcttctacgagtggacttggaatcctagagaatgtttaaatagaagatgaaggtgactgtttttt 36404050  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 37269911 - 37269843
Alignment:
Q  146 ttaagaaagcttccttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaa 214  Q
    |||||| ||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||    
T  37269911 ttaagatagcttccttcctcttttatgagtggacttggaatcctagagaatgtcttaatagaagatgaa 37269843  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 148 - 214
Target Start/End: Original strand, 42941259 - 42941325
Alignment:
Q  148 aagaaagcttccttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaa 214  Q
    |||| ||||||||||||||| ||||||||||||||||||||| |||||||||  |||||||||||||    
T  42941259 aagatagcttccttcctcttttatgagtggacttggaatcctagagaatgtcgtaatagaagatgaa 42941325  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 160 - 214
Target Start/End: Original strand, 9936427 - 9936481
Alignment:
Q  160 ttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaa 214  Q
    |||||||| ||||||||||||||||| ||| || | || ||||||||||||||||    
T  9936427 ttcctcttttatgagtggacttggaaccctagacagtgcctaaatagaagatgaa 9936481  T

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Target: scaffold0760 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 1790 - 1722
Alignment:
Q  146 ttaagaaagcttccttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaa 214  Q
    |||||| ||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||    
T  1790 ttaagatagcttccttcctcttttatgagtggacttggaatcctagagaatgtcttaatagaagatgaa 1722  T

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Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 148 - 234
Target Start/End: Original strand, 16989625 - 16989712
Alignment:
Q  148 aagaaagcttccttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaacgtggctgt-tttttgaatct 234  Q
    |||| |||||| |||||||| ||||||||||| |||||||| |||||||||||||| |||||||||||| |||||| |||||||||||    
T  16989625 aagatagcttctttcctcttctatgagtggacgtggaatccatgagaatgtctaaacagaagatgaacgcggctgtctttttgaatct 16989712  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 148 - 214
Target Start/End: Original strand, 2282262 - 2282328
Alignment:
Q  148 aagaaagcttccttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaa 214  Q
    |||||||| || |||||||| ||||| ||||||| ||| ||| | ||||| ||||||||||||||||    
T  2282262 aagaaagcatcgttcctcttctatgaatggacttagaaccctagggaatgcctaaatagaagatgaa 2282328  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 480
Target Start/End: Original strand, 16989885 - 16989933
Alignment:
Q  431 ttgttttgttgtaacagctagcctctttttgcacttctggtgcttggctt 480  Q
    |||||| ||||||||||||||| |||||| ||||||| ||||||||||||    
T  16989885 ttgtttggttgtaacagctagc-tcttttagcacttccggtgcttggctt 16989933  T

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Target: chr6 (Bit Score: 48; Significance: 4e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 148 - 234
Target Start/End: Complemental strand, 2921002 - 2920915
Alignment:
Q  148 aagaaagcttccttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaacgtggctgt-tttttgaatct 234  Q
    |||| |||||| |||||||| ||||||||||| ||||||||  ||||||||||||| ||||||||||||||||| | |||||||||||    
T  2921002 aagatagcttctttcctcttttatgagtggacatggaatccacgagaatgtctaaacagaagatgaacgtggctttctttttgaatct 2920915  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 148 - 234
Target Start/End: Complemental strand, 18246612 - 18246525
Alignment:
Q  148 aagaaagcttccttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaacgtggctgt-tttttgaatct 234  Q
    |||| |||||| |||||||| ||||||||||| ||||||||  ||||||||||||| |||||||||||| |||||| |||||||||||    
T  18246612 aagatagcttctttcctcttctatgagtggacgtggaatccacgagaatgtctaaacagaagatgaacgcggctgtctttttgaatct 18246525  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 228
Target Start/End: Original strand, 32548928 - 32549009
Alignment:
Q  146 ttaagaaagcttccttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaacgtggctgtttttt 228  Q
    |||||| |||||| ||| |||| ||| ||||||||| ||||||| || ||||||||||||||||||||| |  ||||||||||    
T  32548928 ttaagatagcttctttc-tcttttataagtggacttagaatcctagataatgtctaaatagaagatgaagggtgctgtttttt 32549009  T

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Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 148 - 215
Target Start/End: Complemental strand, 31234811 - 31234744
Alignment:
Q  148 aagaaagcttccttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaac 215  Q
    |||| |||||| |||||||| ||||||||||||||||||||  ||||||||||||| |||||||||||    
T  31234811 aagatagcttctttcctcttctatgagtggacttggaatccacgagaatgtctaaacagaagatgaac 31234744  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 214
Target Start/End: Complemental strand, 42460155 - 42460101
Alignment:
Q  160 ttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaa 214  Q
    |||||||| ||||||| ||||||||||||| |||| || ||||||||||||||||    
T  42460155 ttcctcttttatgagtagacttggaatcctagagagtgcctaaatagaagatgaa 42460101  T

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Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 148 - 234
Target Start/End: Complemental strand, 1259359 - 1259272
Alignment:
Q  148 aagaaagcttccttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaacgtggctgt-tttttgaatct 234  Q
    |||| |||||| |||||||| ||||||||||| ||||||||  ||||||||||||| |||||||||||  |||||| |||||||||||    
T  1259359 aagatagcttctttcctcttctatgagtggacgtggaatccacgagaatgtctaaacagaagatgaacacggctgtctttttgaatct 1259272  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 148 - 234
Target Start/End: Complemental strand, 37242647 - 37242560
Alignment:
Q  148 aagaaagcttccttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaacgtggctgt-tttttgaatct 234  Q
    |||| |||||| |||||||| ||||||||||| ||||||||  ||||||||||||| |||||||||||  |||||| |||||||||||    
T  37242647 aagatagcttctttcctcttctatgagtggacgtggaatccacgagaatgtctaaacagaagatgaacacggctgtctttttgaatct 37242560  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 148 - 234
Target Start/End: Complemental strand, 53553716 - 53553630
Alignment:
Q  148 aagaaagcttccttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaacgtggctgttttttgaatct 234  Q
    |||| |||||| |||||||| ||||||||||||||||||||| |||| || |||||||| ||||||| |  ||||||||||| ||||    
T  53553716 aagatagcttctttcctcttttatgagtggacttggaatcctagagagtgcctaaataggagatgaaaggcgctgttttttggatct 53553630  T

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Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 214
Target Start/End: Complemental strand, 32774181 - 32774127
Alignment:
Q  160 ttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaa 214  Q
    |||||||| ||||||||||||||||||||| |||| || ||||||||||||||||    
T  32774181 ttcctcttttatgagtggacttggaatcctagagagtgcctaaatagaagatgaa 32774127  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 153 - 221
Target Start/End: Complemental strand, 46594924 - 46594856
Alignment:
Q  153 agcttccttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaacgtggct 221  Q
    ||||||||| ||||| || ||||||||||| ||||||  ||||||| ||||||| ||||||| ||||||    
T  46594924 agcttcctttctcttttacgagtggacttgaaatcctaaagaatgtttaaataggagatgaaagtggct 46594856  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 40296163 - 40296118
Alignment:
Q  169 tatgagtggacttggaatccttgagaatgtctaaatagaagatgaa 214  Q
    |||||||||||||||||||||  ||| |||||||||||||||||||    
T  40296163 tatgagtggacttggaatcctaaagagtgtctaaatagaagatgaa 40296118  T

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