View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4638-Insertion-7 (Length: 575)
Name: NF4638-Insertion-7
Description: NF4638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4638-Insertion-7 |
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Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 8 - 334
Target Start/End: Original strand, 44249993 - 44250321
Alignment:
| Q |
8 |
gcttgctcctgctgcaatcgttcaatcgcgaagggatccttatgatgcattagctttaagacaacttgatcacagtaagaagacaaggcctatgtctcct |
107 |
Q |
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| T |
44249993 |
gcttgctcctgctgcaatcgttcaatcgcgaagggatccttatgatgcattagctttaagacaacttgatcacagtaagaagacaaggcctatgtctcct |
44250092 |
T |
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| Q |
108 |
gcaataggtttgtggcaatgcataaatatgattaatcataccaagtttgattttaagatagagaattagagattgacgt--tatgtcttttttcagtggc |
205 |
Q |
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| T |
44250093 |
gcaataggtttgtggcaatgcataaatatgattaatcataccaagtttgattttaagatagagaattagagattgacgttatatgtcttttttcagtggc |
44250192 |
T |
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| Q |
206 |
tgcgagaaaaacaaaaggcaatgtgctgaaagaaaatgcagatccaaattttgtcaaaaacccctaccaagcaattgttatggccagagattcacagaag |
305 |
Q |
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| T |
44250193 |
tgcgagaaaaacaaaaggcaatgtgctgaaagaaaatgcagatccaaattttgtcaaaaacccctaccaagcaattgtcatggccagagattcacagaag |
44250292 |
T |
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| Q |
306 |
caaagagaagaaactttaaaaatgcaggc |
334 |
Q |
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| T |
44250293 |
caaagagaagaaactttaaaaatgcaggc |
44250321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 397 - 575
Target Start/End: Original strand, 44250384 - 44250562
Alignment:
| Q |
397 |
ttgttattcaagatctcgaaatgacacttataaaacgtaagaggaaagcagaaaaatgcagacggttagcggaagctcaatcttcttacagaaccatgct |
496 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44250384 |
ttgttattcaagatctcgaaatgacacttataaaacgtaagaggaaagcagaaaaatgcagacggttagcggaagctcaatcttcttacagaaccatgct |
44250483 |
T |
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| Q |
497 |
agagaaaatgatcagagacaccatgcaccagtaagcttcattaaccaaagtttaaatgcttaattcttttctttatata |
575 |
Q |
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| T |
44250484 |
agagaaaatgatcagagacaccatgcaccagtaagcttcattaaccaaagttgaaatgcttaattcttttctttatata |
44250562 |
T |
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