View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4638_high_1 (Length: 445)
Name: NF4638_high_1
Description: NF4638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4638_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Complemental strand, 5894218 - 5893791
Alignment:
| Q |
1 |
atgaaattctcattgctctctctgattactctcaagacacaattttagtttgatgtatatgatgtatgtgataaatggtattatatatatagttgcaaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5894218 |
atgaaattctcattgctctctctgattactctcaagacacaattttagtttgatgtatatgatgtatgtgataaatggtattatatatatagttgcaaac |
5894119 |
T |
|
| Q |
101 |
aggcaaatagctagagtacaagagaagtttctttgaagaagagcagtgtggtcactcacaccatgacttccaactcttccattcatttttgacaggcagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5894118 |
aggcaaatagctagagtacaagagaagtttctttgaagaagagcagtgtggtcactcacaccatgacttccaactcttccattcatttttgacaggtagt |
5894019 |
T |
|
| Q |
201 |
ctcacctttcccattcaattttagggaaccttcttagcaatataccttatgtttccagttatgtttgcctaagcttttcttaaaaaatattttggtnnnn |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5894018 |
ctcacctttcccattcaattttagggaaccttcttagcaatataccttatgtttccagttatgtttgtctaagcttttcttaaaaaatattttggcaaaa |
5893919 |
T |
|
| Q |
301 |
nnnttacttttaaggattagtttctgaagagacagaaatataaatcatattgtaaggaaagagactcttgacttaatgattattgtaaagaaagtgtaaa |
400 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
5893918 |
aaatttcttttaaggattagtttctgaagagacagaaatataaatcatattgtaaggaaagagactcttgacttaatgattatggtaaagaacgtgtaaa |
5893819 |
T |
|
| Q |
401 |
gccggcatggctgatgataagtcccttt |
428 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
5893818 |
gccggcatggctgatgataagtcccttt |
5893791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 122 - 227
Target Start/End: Original strand, 5580039 - 5580144
Alignment:
| Q |
122 |
gagaagtttctttgaagaagagcagtgtggtcactcacaccatgacttccaactcttccattcatttttgacaggcagtctcacctttcccattcaattt |
221 |
Q |
| |
|
|||||||||||||||||||| | |||| ||||||||||| ||||||||||| ||||||||||||||||||| || ||| |||||||||||||||||||| |
|
|
| T |
5580039 |
gagaagtttctttgaagaagggatgtgtcgtcactcacacgatgacttccaagtcttccattcatttttgacgggtagtgtcacctttcccattcaattt |
5580138 |
T |
|
| Q |
222 |
taggga |
227 |
Q |
| |
|
|||||| |
|
|
| T |
5580139 |
taggga |
5580144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 124 - 173
Target Start/End: Original strand, 5585843 - 5585892
Alignment:
| Q |
124 |
gaagtttctttgaagaagagcagtgtggtcactcacaccatgacttccaa |
173 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5585843 |
gaagtttcttcgaagaagagcagtgtggtcattcacaccatgacttccaa |
5585892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 206 - 247
Target Start/End: Original strand, 5585907 - 5585948
Alignment:
| Q |
206 |
ctttcccattcaattttagggaaccttcttagcaatatacct |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5585907 |
ctttcccattcaattttagggaaccttcttagcaatatacct |
5585948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 115 - 178
Target Start/End: Original strand, 5560337 - 5560398
Alignment:
| Q |
115 |
agtacaagagaagtttctttgaagaagagcagtgtggtcactcacaccatgacttccaactctt |
178 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
5560337 |
agtataagagaagtttcgttgaagaagagcagtgtggtcactcaca--atgacttccaagtctt |
5560398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 36 - 79
Target Start/End: Original strand, 5560251 - 5560294
Alignment:
| Q |
36 |
gacacaattttagtttgatgtatatgatgtatgtgataaatggt |
79 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5560251 |
gacacaattttagtttgatatatatgatgtatgtgataaatggt |
5560294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 5585765 - 5585832
Alignment:
| Q |
6 |
attctcattgctctctctgattactctcaagacacaattttagtttgatgtatatgatgtatgtgataaatggt |
79 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||||||||| |||||| | ||||||||||||||| |
|
|
| T |
5585765 |
attctcattgctctctctaattactc---ggacacaattttagtttga--tatatg-tatatgtgataaatggt |
5585832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University