View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4638_high_4 (Length: 227)
Name: NF4638_high_4
Description: NF4638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4638_high_4 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 7154524 - 7154298
Alignment:
| Q |
1 |
ccaaaaggaatatactcaaaattatttcctttgaaatcaatcaaactaccatcaaacctctctggaatgaacatctcagcatcagtccaatattgtggat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7154524 |
ccaaaaggaatatactcaaaattatttcctttgaaatcaatcaaactaccatcaaacctctctggaatgaacatctcagcatcagtccaatattgtggat |
7154425 |
T |
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| Q |
101 |
ctcttgccactgcccatgcatttatcatcactttagtattttttggtatttcataaccatctatgatggtcaattcagtgcattctctagggaccaataa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7154424 |
ctcttgccactgcccatgcatttatcatcactttagtattttttggtatttcataaccatctatgatggtcaattcagtgcattctctagggaccaataa |
7154325 |
T |
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| Q |
201 |
aggtgaaggtgggtgtaacctcattgt |
227 |
Q |
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| T |
7154324 |
aggtgaaggtgggtgtaacctcattgt |
7154298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 7132030 - 7131810
Alignment:
| Q |
1 |
ccaaaaggaatatactcaaaattatttcctttgaaatcaatcaaactaccatcaaacctctctggaatgaacatctcagcatcagtccaatattgtggat |
100 |
Q |
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|||||||||| ||| ||||||||||| ||| | |||||||| ||||||| ||||| ||||||||| | |||||||||||||||||||||||||| |||| |
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| T |
7132030 |
ccaaaaggaagatattcaaaattattccctctaaaatcaatagaactaccttcaaatctctctggattaaacatctcagcatcagtccaatattgaggat |
7131931 |
T |
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| Q |
101 |
ctcttgccactgcccatgcatttatcatcactttagtattttttggtatttcataaccatctatgatggtcaattcagtgcattctctagggaccaataa |
200 |
Q |
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| T |
7131930 |
cccttgccatagcccatacattaatcatgactttagtcttttttggtatatcataaccatcaatgttggttaattcagtgcattctctagggagtaataa |
7131831 |
T |
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| Q |
201 |
aggtgaaggtgggtgtaacct |
221 |
Q |
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| T |
7131830 |
aggagtaggtgagtgtaacct |
7131810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 4 - 223
Target Start/End: Complemental strand, 7141751 - 7141532
Alignment:
| Q |
4 |
aaaggaatatactcaaaattatttcctttgaaatcaatcaaactaccatcaaacctctctggaatgaacatctcagcatcagtccaatattgtggatctc |
103 |
Q |
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|||||||| ||||| || ||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||| ||||||||| ||||||| |
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| T |
7141751 |
aaaggaatgtactcgaagttatttcctttgaaatcaatcaaactatcatcaaacctctctggaataaacctctcagcatcattccaatatttaggatctc |
7141652 |
T |
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| Q |
104 |
ttgccactgcccatgcatttatcatcactttagtattttttggtatttcataaccatctatgatggtcaattcagtgcattctctagggaccaataaagg |
203 |
Q |
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| T |
7141651 |
ttcctattgcccacgcatttataaagactgtagtattttttggtatatcatacccatctattttggttagttctgtgctcaatcttggaaccaacaaagg |
7141552 |
T |
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| Q |
204 |
tgaaggtgggtgtaacctca |
223 |
Q |
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| T |
7141551 |
agaaggtgggtgtaacctca |
7141532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 22986286 - 22986347
Alignment:
| Q |
1 |
ccaaaaggaatatactcaaaattatttcctttgaaatcaatcaaactaccatcaaacctctc |
62 |
Q |
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||||| ||||| |||||||||||| |||||||||||||||| ||||| || ||||||||| |
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| T |
22986286 |
ccaaatggaatgtactcaaaattagttcctttgaaatcaatagaactatcaataaacctctc |
22986347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 165
Target Start/End: Original strand, 55954999 - 55955067
Alignment:
| Q |
97 |
ggatctcttgccactgcccatgcatttatcatcactttagtattttttggtatttcataaccatctatg |
165 |
Q |
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| T |
55954999 |
ggatctcttccaattgcccatgcatttactatcacgctagtctttattggtatttcatatccatctatg |
55955067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 12637010 - 12637042
Alignment:
| Q |
1 |
ccaaaaggaatatactcaaaattatttcctttg |
33 |
Q |
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||||||||||| ||||||||||||||||||||| |
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| T |
12637010 |
ccaaaaggaatgtactcaaaattatttcctttg |
12637042 |
T |
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