View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4638_high_5 (Length: 222)
Name: NF4638_high_5
Description: NF4638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4638_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 6e-95; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 14 - 197
Target Start/End: Complemental strand, 11645208 - 11645025
Alignment:
| Q |
14 |
cacctttttcaaaactgttcaatgttaaggttgctttattgagttgtcctaatgctacttcaatgcttagacaaaaagttgatacaagaattagaagaaa |
113 |
Q |
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| T |
11645208 |
cacctttttcaaaactgttcaatgttaaggttgctttattgagttgtcctgatgctacttcaatgcttagacaaaaagttgatacaagaattagaagaaa |
11645109 |
T |
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| Q |
114 |
gatcatggtttgattgaaatttgaactaaatttgacacccttcattttattttgattttcttttctcaatgatggtgtgaagta |
197 |
Q |
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| T |
11645108 |
gatcatggtttgattggaatttgaactaaatttgacacccttcattttattttgattttcttttctcaatgatggtgtgaagta |
11645025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 71 - 197
Target Start/End: Complemental strand, 11654569 - 11654443
Alignment:
| Q |
71 |
cttcaatgcttagacaaaaagttgatacaagaattagaagaaagatcatggtttgattgaaatttgaactaaatttgacacccttcattttattttgatt |
170 |
Q |
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| T |
11654569 |
cttcaatgcttaggcataaagttgatacaagaattagaagaaagattatggtttgaatgaaatttaaactaattttgacacccttcattttatttttatt |
11654470 |
T |
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| Q |
171 |
ttcttttctcaatgatggtgtgaagta |
197 |
Q |
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| T |
11654469 |
ttgttttcttaacgatggtgtgaagta |
11654443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 71 - 196
Target Start/End: Complemental strand, 11622046 - 11621925
Alignment:
| Q |
71 |
cttcaatgcttagacaaaaagttgatacaagaattagaagaaagatcatggtttgattgaaatttgaactaaatttgacacccttcattttattttgatt |
170 |
Q |
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| T |
11622046 |
cttcaatgcttgagcacaaagttgatacaaggattagaagaatgaccatggtttgaatgaaatttgaactaattttgacacccttcattttatt---att |
11621950 |
T |
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| Q |
171 |
ttcttttctcaatgatggtgtgaagt |
196 |
Q |
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| T |
11621949 |
tt-tattttcaatgatggtgtgaagt |
11621925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 71 - 164
Target Start/End: Complemental strand, 11640609 - 11640516
Alignment:
| Q |
71 |
cttcaatgcttagacaaaaagttgatacaagaattagaagaaagatcatggtttgattgaaatttgaactaaatttgacacccttcattttatt |
164 |
Q |
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| T |
11640609 |
cttcaatgcttgagcacaaagttgatacaaggattacaagaatgatcattgtttgaatggaacttgaactcattttgacacccttcattttatt |
11640516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 11622133 - 11622095
Alignment:
| Q |
14 |
cacctttttcaaaactgttcaatgttaaggttgctttat |
52 |
Q |
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| T |
11622133 |
cacctttttcaaagctgttcaatgttaagattgctttat |
11622095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 11640696 - 11640658
Alignment:
| Q |
14 |
cacctttttcaaaactgttcaatgttaaggttgctttat |
52 |
Q |
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| T |
11640696 |
cacctttttcaaagctgttcaatgttaagattgctttat |
11640658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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