View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4638_low_2 (Length: 412)
Name: NF4638_low_2
Description: NF4638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4638_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 94 - 399
Target Start/End: Complemental strand, 4710117 - 4709812
Alignment:
| Q |
94 |
cacataacaaaacggtggctgctaatgctgattattttgtaattctgattgtatggatcagtgaaccaatgtctggcaactctggcattctttgggattg |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4710117 |
cacataacaaaacggtggctgctaatgctgattattttgtaattctgattgtatggatcagtgaaccaatgtctggcaactctggcattctttgggattg |
4710018 |
T |
|
| Q |
194 |
gagtgaacctagtggtattcctgacaagggtggtaggacaaaataacgcggaagccgccaacaacgtgagcaaatggactggaactgtttacatcttctc |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4710017 |
gagtgaacctagtggtattcctgacaagggtggtaggacaaaataatgcagaagccgccaacaacgtgagcaaatggactggaactgtttacatcttctc |
4709918 |
T |
|
| Q |
294 |
tctagtgggagctttcctaagtgactcttattggggaagatataaaacatgtgctgtctttcaggtcatttttgtaattgtaagtaacgcctctcagttt |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4709917 |
tctagtgggagctttcctaagtgactcttattggggaagatataaaacatgtgctgtctttcaggtcatttttgtaattgtaagtaacgcctctcagttt |
4709818 |
T |
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| Q |
394 |
catctc |
399 |
Q |
| |
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|||||| |
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| T |
4709817 |
catctc |
4709812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 4710219 - 4710167
Alignment:
| Q |
22 |
agagcctaatacagatgctacaaaaacagaatccataacaacatatatatata |
74 |
Q |
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| T |
4710219 |
agagcctaatacagatgctacaaaaacagaatccataacaacatatatatata |
4710167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 152 - 380
Target Start/End: Original strand, 40742294 - 40742522
Alignment:
| Q |
152 |
cagtgaaccaatgtctggcaactctggcattctttgggattggagtgaacctagtggtattcctgacaagggtggtaggacaaaataacgcggaagccgc |
251 |
Q |
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||||||||||| |||| ||||| | ||||||||||| |||||||||||||||| | ||| ||||||||||| | || ||| |||| || | || || |
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| T |
40742294 |
cagtgaaccaaggtctagcaaccttagcattctttggagttggagtgaacctagttctgttcttgacaagggtgttgggtcaagataatgctgctgctgc |
40742393 |
T |
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| Q |
252 |
caacaacgtgagcaaatggactggaactgtttacatcttctctctagtgggagctttcctaagtgactcttattggggaagatataaaacatgtgctgtc |
351 |
Q |
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| T |
40742394 |
taacaatgtcagcaagtggactggcacagtttacatcttctctcttgttggtgctttccttagtgattcttattggggaagatacaaaacatgtgctatc |
40742493 |
T |
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| Q |
352 |
tttcaggtcatttttgtaattgtaagtaa |
380 |
Q |
| |
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||||| | ||||||||||| |||||||| |
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| T |
40742494 |
tttcaaggcatttttgtaaccgtaagtaa |
40742522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 253 - 335
Target Start/End: Original strand, 2743494 - 2743576
Alignment:
| Q |
253 |
aacaacgtgagcaaatggactggaactgtttacatcttctctctagtgggagctttcctaagtgactcttattggggaagata |
335 |
Q |
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||||| |||||||| ||||| || || ||||||||||| ||||| | ||||||||||| ||||||||||| ||||||||||| |
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| T |
2743494 |
aacaatgtgagcaagtggacagggacagtttacatcttttctcttcttggagctttcctcagtgactcttactggggaagata |
2743576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 253 - 335
Target Start/End: Complemental strand, 3804657 - 3804575
Alignment:
| Q |
253 |
aacaacgtgagcaaatggactggaactgtttacatcttctctctagtgggagctttcctaagtgactcttattggggaagata |
335 |
Q |
| |
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||||| || ||||| |||||||||||||||||||| || || || ||||||| ||||| ||||| ||||||||||||||||| |
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| T |
3804657 |
aacaatgtcagcaagtggactggaactgtttacattttttcactcttgggagcattccttagtgattcttattggggaagata |
3804575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 268 - 357
Target Start/End: Original strand, 396068 - 396157
Alignment:
| Q |
268 |
tggactggaactgtttacatcttctctctagtgggagctttcctaagtgactcttattggggaagatataaaacatgtgctgtctttcag |
357 |
Q |
| |
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|||||||||||||||||||| || || || ||||||| ||||| ||||| ||||||||||||||||| |||||| ||| |||||||| |
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| T |
396068 |
tggactggaactgtttacatattttcactcttgggagcattccttagtgattcttattggggaagatacttaacatgcgctatctttcag |
396157 |
T |
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