View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4638_low_3 (Length: 283)
Name: NF4638_low_3
Description: NF4638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4638_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 8 - 253
Target Start/End: Complemental strand, 45099694 - 45099449
Alignment:
| Q |
8 |
gattatactattgcattggaccaacgtcaaatttgtagataaggaaactaccataaatcagttatagctggacattttttgagagaaagaagggctacca |
107 |
Q |
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| T |
45099694 |
gattatactattgcattggaccaacgtcaaatttgtagataaggaaactaccataaatgagttatagatggacatttttggagagaaagaagggctacca |
45099595 |
T |
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| Q |
108 |
agtaccatatgagcaccaaaattttgtcttcaattccaccaaatttaaagaaaataaaagcaacaaaagaaccattcatctctaattcaaagtaaagtac |
207 |
Q |
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| T |
45099594 |
agtaccatatgagcaccaaaattttgtcttcaattccaccaaatttaaataaaataaaagcaacagaagaaccattcatctctatttcaaagtaaagtac |
45099495 |
T |
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| Q |
208 |
tttaaacatagaagcaaacatacacagacacaaacacacacttatt |
253 |
Q |
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| T |
45099494 |
tttaaacatagaagcacacatacacagacacaaacacatacttatt |
45099449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 220
Target Start/End: Complemental strand, 19110564 - 19110502
Alignment:
| Q |
158 |
aaaataaaagcaacaaaagaaccattcatctctaattcaaagtaaagtactttaaacatagaa |
220 |
Q |
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| T |
19110564 |
aaaaaaaaagctacagaagagtcattcatctctatttcaaattaaagtactttaaacatagaa |
19110502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 12228069 - 12228005
Alignment:
| Q |
9 |
attatactattgcattggaccaacgtcaaatttgtagataaggaaactaccataaatcagttata |
73 |
Q |
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| T |
12228069 |
attatactattgcattggaccggcgtcaaatttgtagataaggaaactaccataaatcagttata |
12228005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 161 - 239
Target Start/End: Complemental strand, 12228007 - 12227929
Alignment:
| Q |
161 |
ataaaagcaacaaaagaaccattcatctctaattcaaagtaaagtactttaaacatagaagcaaacatacacagacaca |
239 |
Q |
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| T |
12228007 |
ataaaagcaacagaagaaccattcatctcgatttcaaagtaaagtactttaaacatacaagcacacatacacaaacaca |
12227929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 100
Target Start/End: Original strand, 35168102 - 35168168
Alignment:
| Q |
35 |
caaatttgtagataaggaaactaccataaatcagttatagctggacattttttg-agagaaagaagg |
100 |
Q |
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| T |
35168102 |
caaatttgtagataaggaaactaccataaatcaattataacagggcatttttggaagagaaagaagg |
35168168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 253
Target Start/End: Complemental strand, 7963367 - 7963268
Alignment:
| Q |
163 |
aaaagcaacaaaagaaccattcatctctaattcaaagtaaagtactttaaacatagaagca-----aa----catacacagacacaaacacacacttatt |
253 |
Q |
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|||||| ||| |||| |||||||||||| |||||| ||||||||||||||||||||| || || |||||||||||||||||||||||||||| |
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| T |
7963367 |
aaaagctacagaagagtcattcatctctatttcaaattaaagtactttaaacatagaaacacttacaacacgcatacacagacacaaacacacacttatt |
7963268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 18716885 - 18716925
Alignment:
| Q |
180 |
cattcatctctaattcaaagtaaagtactttaaacatagaa |
220 |
Q |
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| T |
18716885 |
cattcatctctatttcaaattaaagtactttaaacatagaa |
18716925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 217
Target Start/End: Original strand, 14465054 - 14465091
Alignment:
| Q |
180 |
cattcatctctaattcaaagtaaagtactttaaacata |
217 |
Q |
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|||||||||||| |||||| |||||||||||||||||| |
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| T |
14465054 |
cattcatctctatttcaaattaaagtactttaaacata |
14465091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 217
Target Start/End: Complemental strand, 29467183 - 29467146
Alignment:
| Q |
180 |
cattcatctctaattcaaagtaaagtactttaaacata |
217 |
Q |
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| T |
29467183 |
cattcatctctatttcaaattaaagtactttaaacata |
29467146 |
T |
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