View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4639-Insertion-1 (Length: 1050)

Name: NF4639-Insertion-1
Description: NF4639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4639-Insertion-1
NF4639-Insertion-1
[»] chr4 (25 HSPs)
chr4 (367-1050)||(25180752-25181440)
chr4 (549-824)||(25169146-25169421)
chr4 (549-850)||(25251807-25252108)
chr4 (8-309)||(25180389-25180694)
chr4 (8-278)||(25252275-25252545)
chr4 (8-278)||(25168721-25168995)
chr4 (367-456)||(25169050-25169139)
chr4 (367-456)||(25252115-25252204)
chr4 (194-282)||(25160351-25160439)
chr4 (541-625)||(25160726-25160810)
chr4 (12-101)||(25160164-25160253)
chr4 (692-752)||(24999199-24999259)
chr4 (540-625)||(25000218-25000303)
chr4 (692-752)||(7727743-7727803)
chr4 (541-625)||(24986838-24986922)
chr4 (704-752)||(25041616-25041664)
chr4 (541-625)||(25047254-25047338)
chr4 (693-752)||(24987851-24987910)
chr4 (11-85)||(25000779-25000853)
chr4 (684-749)||(25161083-25161148)
chr4 (11-94)||(24986310-24986393)
chr4 (685-752)||(25048490-25048557)
chr4 (564-625)||(4600902-4600963)
chr4 (693-750)||(25193119-25193176)
chr4 (889-922)||(25251738-25251771)
[»] chr5 (1 HSPs)
chr5 (542-625)||(30360258-30360341)
[»] chr3 (5 HSPs)
chr3 (182-269)||(9213394-9213481)
chr3 (542-625)||(9213039-9213122)
chr3 (8-101)||(9213692-9213785)
chr3 (685-750)||(9212605-9212670)
chr3 (196-252)||(8090507-8090563)
[»] chr2 (8 HSPs)
chr2 (191-282)||(42157004-42157095)
chr2 (546-625)||(42289974-42290053)
chr2 (175-281)||(42167486-42167592)
chr2 (191-282)||(42290325-42290416)
chr2 (16-101)||(42167210-42167295)
chr2 (546-625)||(42157372-42157451)
chr2 (16-100)||(42290572-42290656)
chr2 (546-625)||(42167879-42167958)
[»] chr6 (9 HSPs)
chr6 (14-97)||(29422946-29423029)
chr6 (13-94)||(29460043-29460124)
chr6 (197-270)||(29460231-29460304)
chr6 (544-625)||(29405630-29405711)
chr6 (197-270)||(29422787-29422860)
chr6 (692-752)||(29421030-29421090)
chr6 (692-731)||(29462162-29462201)
chr6 (543-625)||(29422194-29422276)
chr6 (543-625)||(29461205-29461287)


Alignment Details
Target: chr4 (Bit Score: 598; Significance: 0; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 367 - 1050
Target Start/End: Original strand, 25180752 - 25181440
Alignment:
Q  367 gaagtttatattcttaccatttgtcaccaattcatctatgagattattgtaatagtcaattccttcatgattaattcctccacttagttttccttctgca 466  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  25180752 gaagtttatattcttaccatttgtcaccaattcatcaatgagattattgtaatagtcaattccttcttgattaattcctccacttagttttccttctgca 25180851  T
Q  467 taaattatnnnnnnnntatatggttggtgaaaagaaactaagtttaattgagaatagtctattggtataaaattgacttacttgggagtattctagacca 566  Q
    ||||| ||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25180852 taaataataaaaaaaatatatggttggtgaaaagaaactaagtttaattgagaatagtctattggtataaaattgacttacttgggagtattctagacca 25180951  T
Q  567 agatatggaaaatctgtatgcatccaagttcatatccttcatgataccaacatcttccttatatcgatgatacgagtcaaccgcaacgtctccattgttt 666  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25180952 agatatggaaaatctgtatgcatccaagttcatatccttcatgataccaacatcttccttatatcgatgatacgagtcaaccgcaacgtctccattgttt 25181051  T
Q  667 ccatcagtgattttttgaggatatctatgagtgaatgtatcccatatacttggtcctcttccaccttcacttgctgcaccttcatattgatatgcagaag 766  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  25181052 ccatcagtgattttttgaggatatctatgagtgaaagtatcccatatacttgctcctcttccaccttcacttgctgcaccttcatattgatatgcagaag 25181151  T
Q  767 atgctgtgccaaatataaagccttctgggaaatcatttctatttaatgaacctatttgcaatggtgcagtgttaattatttctttaccttctgtaatgat 866  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25181152 atgctgtgccaaatataaagccttctgggaaatcatttctatttaatgaacctatttgcaatggtgcagtgttaattatttctttaccttctgtaatgat 25181251  T
Q  867 gaatgttgaaactaaggataacaagagagaaaataggagatatctcatgtttaatgtcataagtgcttattttataattgcttttctgggttaggtaa-- 964  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||      
T  25181252 gaatgttgaaactaaggataacaagagagaaaataggagatatctcatgtttaatgtcataagtgcttattttataattgcttttgtgggttaggtaaac 25181351  T
Q  965 catgc-agcgagcgttgcttcttatataagaaag-aaatttttggtggca-gcttctattgcacatttttctagtcaaattaaatttca 1050  Q
     |||| |||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  25181352 aatgcaagcgagcgttgcttcttatataagaaagaaaaattttggtggcaggcttctattgcacatttttctagtcaaattaaatttca 25181440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 549 - 824
Target Start/End: Original strand, 25169146 - 25169421
Alignment:
Q  549 tgggagtattctagaccaagatatggaaaatctgtatgcatccaagttcatatccttcatgataccaacatcttccttatatcgatgatacgagtcaacc 648  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25169146 tgggagtattctagaccaagatatggaaaatctgtatgcatccaagttcatatccttcatgataccaacatcttccttatatcgatgatacgagtcaacc 25169245  T
Q  649 gcaacgtctccattgtttccatcagtgattttttgaggatatctatgagtgaatgtatcccatatacttggtcctcttccaccttcacttgctgcacctt 748  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  25169246 gcaacgtctccattgtttccatcactgattttttgaggatatctatgagtgaatgtatcccaaatacttggtcctcttccaccttcacttgctgcacctt 25169345  T
Q  749 catattgatatgcagaagatgctgtgccaaatataaagccttctgggaaatcatttctatttaatgaacctatttg 824  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||    
T  25169346 catattgatatgcagaagatgctgtgccaaatataaagccttctgggaaatcatttctattcaaagtacctatttg 25169421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 549 - 850
Target Start/End: Complemental strand, 25252108 - 25251807
Alignment:
Q  549 tgggagtattctagaccaagatatggaaaatctgtatgcatccaagttcatatccttcatgataccaacatcttccttatatcgatgatacgagtcaacc 648  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25252108 tgggagtattctagaccaagatatggaaaatctgtatgcatccaagttcatatccttcatgataccaacatcttccttatatcgatgatacgagtcaacc 25252009  T
Q  649 gcaacgtctccattgtttccatcagtgattttttgaggatatctatgagtgaatgtatcccatatacttggtcctcttccaccttcacttgctgcacctt 748  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  25252008 gcaacgtctccattgtttccatcagtgattttttgaggatatctatgagtgaaagtatcccatatacttgctcctcttccaccttcacttgctgcacctt 25251909  T
Q  749 catattgatatgcagaagatgctgtgccaaatataaagccttctgggaaatcatttctatttaatgaacctatttgcaatggtgcagtgttaattatttc 848  Q
    ||||||||||||||||||||||||||||||| || |||||||| || ||||| || ||||| |||||||||| |||   ||| | ||| |||||||||||    
T  25251908 catattgatatgcagaagatgctgtgccaaagatgaagccttcaggaaaatctttcctattcaatgaacctacttgtggtggagtagtattaattatttc 25251809  T
Q  849 tt 850  Q
    ||    
T  25251808 tt 25251807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 8 - 309
Target Start/End: Original strand, 25180389 - 25180694
Alignment:
Q  8 gtaactccatggctcattcaaagttatccaatgttttactctatctccaaatgttttaaagcaaagttccgcatagtcttgaaaatcttttctgtagttt 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  25180389 gtaactccatggctcattcaaagttatccaatgttttactctatctccaaatgttttaaagcaaagttccgcatagtcttgaaaatcttttctgtagttg 25180488  T
Q  108 aaagtatgtaaagatgaatgagaaacatattcataaccatttaaaccaatt----aaatgaaaatttgaaattgtgtcactcacatgatgagaggactta 203  Q
     | ||||| ||||||||||||||||||| |||||||| ||  |||  || |    | |||||| ||||||||||||||||||||||||||||||||||||    
T  25180489 gaggtatgaaaagatgaatgagaaacattttcataactatagaaaataagtttccagatgaaattttgaaattgtgtcactcacatgatgagaggactta 25180588  T
Q  204 agaagccgccatattcatcttctagagtttgaggaagatcccagtgaaaaagagttacaaatggttgtaaacctgcaattttttcgacataagacggcta 303  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25180589 agaagccgccatattcatcttctagagtttgaggaagatcccaatgaaaaagagttacaaatggttgtaaacctgcaattttttcgacataagacggcta 25180688  T
Q  304 ttttgg 309  Q
    ||||||    
T  25180689 ttttgg 25180694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 8 - 278
Target Start/End: Complemental strand, 25252545 - 25252275
Alignment:
Q  8 gtaactccatggctcattcaaagttatccaatgttttactctatctccaaatgttttaaagcaaagttccgcatagtcttgaaaatcttttctgtagttt 107  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||     
T  25252545 gtaagtccatggttcattcaaagttatccaatgttttactctatctccaaatgttttgaagcaaagttccgcatagtcttgaaagtcttttctgtagttg 25252446  T
Q  108 aaagtatgtaaagatgaatgagaaacatattcataaccatttaaaccaattaaatgaaaatttgaaattgtgtcactcacatgatgagaggacttaagaa 207  Q
    ||  ||| ||| |||||||||||||| | |||||||| |||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  25252445 aagatatataatgatgaatgagaaactttttcataactatttaaactaattaagtgaaaatttgaaattgtatcactcacatgatgagaggacttaagaa 25252346  T
Q  208 gccgccatattcatcttctagagtttgaggaagatcccagtgaaaaagagttacaaatggttgtaaacctg 278  Q
     |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  25252345 tccgccatattcatcttctagagtttgaggaagatcccaatgaaaaagagttacaaatggttgtaaacctg 25252275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 190; E-Value: 1e-102
Query Start/End: Original strand, 8 - 278
Target Start/End: Original strand, 25168721 - 25168995
Alignment:
Q  8 gtaactccatggctcattcaaagttatccaatgttttactctatctccaaatgttttaaagcaaagttccgcatagtcttgaaaatcttttctgta---- 103  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||        
T  25168721 gtaagtccatggttcattcaaagttatccaatgttttactctatctccaaatgttttgaagcaaagttccgcatagtcttgaaagtcttttctgtacgta 25168820  T
Q  104 gtttaaagtatgtaaagatgaatgagaaacatattcataaccatttaaaccaattaaatgaaaatttgaaattgtgtcactcacatgatgagaggactta 203  Q
    ||| ||  ||| ||| |||||||||||||| | |||||||| |||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  25168821 gttgaagatatataatgatgaatgagaaactttttcataactatttaaactaattaagtgaaaatttgaaattgtatcactcacatgatgagaggactta 25168920  T
Q  204 agaagccgccatattcatcttctagagtttgaggaagatcccagtgaaaaagagttacaaatggttgtaaacctg 278  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  25168921 agaaaccgccatattcatcttctagagtttgaggaagatcccaatgaaaaagagttacaaatggttgtaaacctg 25168995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 367 - 456
Target Start/End: Original strand, 25169050 - 25169139
Alignment:
Q  367 gaagtttatattcttaccatttgtcaccaattcatctatgagattattgtaatagtcaattccttcatgattaattcctccacttagttt 456  Q
    ||||||| ||||||||||||||| |||||| ||||  ||||| || ||||||||||| |||||||| |||||||||||||||||||||||    
T  25169050 gaagtttgtattcttaccatttgccaccaactcattgatgaggttgttgtaatagtcgattccttcttgattaattcctccacttagttt 25169139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 367 - 456
Target Start/End: Complemental strand, 25252204 - 25252115
Alignment:
Q  367 gaagtttatattcttaccatttgtcaccaattcatctatgagattattgtaatagtcaattccttcatgattaattcctccacttagttt 456  Q
    ||||||| ||||||||||||||| |||||| ||||  ||||| || ||||||||||| |||||||| |||||||||||||||||||||||    
T  25252204 gaagtttgtattcttaccatttgccaccaactcattgatgaggttgttgtaatagtcgattccttcttgattaattcctccacttagttt 25252115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 194 - 282
Target Start/End: Original strand, 25160351 - 25160439
Alignment:
Q  194 agaggacttaagaagccgccatattcatcttctagagtttgaggaagatcccagtgaaaaagagttacaaatggttgtaaacctgcaat 282  Q
    ||||||||||||||||| ||||| || ||||||| |||||||||||||||||| || |||||||| || |||||||||| |||||||||    
T  25160351 agaggacttaagaagccaccatactcttcttctaaagtttgaggaagatcccaatggaaaagagtcactaatggttgtatacctgcaat 25160439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 541 - 625
Target Start/End: Original strand, 25160726 - 25160810
Alignment:
Q  541 gacttacttgggagtattctagaccaagatatggaaaatctgtatgcatccaagttcatatccttcatgataccaacatcttcct 625  Q
    ||||||||||| | |||||||||||| |||||||| |||||||||| ||| ||||||||||| ||||||||   |||||||||||    
T  25160726 gacttacttggcaatattctagaccaggatatggagaatctgtatgaatctaagttcatatctttcatgatcttaacatcttcct 25160810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 101
Target Start/End: Original strand, 25160164 - 25160253
Alignment:
Q  12 ctccatggctcattcaaagttatccaatgttttactctatctccaaatgttttaaagcaaagttccgcatagtcttgaaaatcttttctg 101  Q
    ||||||||||| |||||||| | |||||  || |||||||| ||||||   || || |||||||||||||||||||||||||||||||||    
T  25160164 ctccatggctcgttcaaagtaacccaatacttgactctatcaccaaattccttgaaacaaagttccgcatagtcttgaaaatcttttctg 25160253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 692 - 752
Target Start/End: Complemental strand, 24999259 - 24999199
Alignment:
Q  692 tatgagtgaatgtatcccatatacttggtcctcttccaccttcacttgctgcaccttcata 752  Q
    ||||||| || ||||||||||||||||||||| |||||||||| ||| |||||||||||||    
T  24999259 tatgagtaaaggtatcccatatacttggtccttttccaccttctcttactgcaccttcata 24999199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 540 - 625
Target Start/End: Complemental strand, 25000303 - 25000218
Alignment:
Q  540 tgacttacttgggagtattctagaccaagatatggaaaatctgtatgcatccaagttcatatccttcatgataccaacatcttcct 625  Q
    |||||||||||| || | |||||||||||| || |||||||| || |||||||  |||| |||||||||||| |||| ||||||||    
T  25000303 tgacttacttggtagcactctagaccaagaaattgaaaatctataagcatccatattcaaatccttcatgattccaatatcttcct 25000218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 692 - 752
Target Start/End: Complemental strand, 7727803 - 7727743
Alignment:
Q  692 tatgagtgaatgtatcccatatacttggtcctcttccaccttcacttgctgcaccttcata 752  Q
    |||||||||| ||||||||||||||||| ||| | |||||||||  |||||||||||||||    
T  7727803 tatgagtgaaggtatcccatatacttggccctttgccaccttcatgtgctgcaccttcata 7727743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 541 - 625
Target Start/End: Original strand, 24986838 - 24986922
Alignment:
Q  541 gacttacttgggagtattctagaccaagatatggaaaatctgtatgcatccaagttcatatccttcatgataccaacatcttcct 625  Q
    ||||||||||| || | |||||||||||  |||||||||||||| |||||||  |||| |||||| ||||| |||| ||||||||    
T  24986838 gacttacttggtagcactctagaccaagcaatggaaaatctgtaagcatccatattcaaatcctttatgattccaatatcttcct 24986922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 704 - 752
Target Start/End: Original strand, 25041616 - 25041664
Alignment:
Q  704 tatcccatatacttggtcctcttccaccttcacttgctgcaccttcata 752  Q
    |||||||||||||| ||||||||||||||||| |||| |||||||||||    
T  25041616 tatcccatatactttgtcctcttccaccttcatttgcagcaccttcata 25041664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 541 - 625
Target Start/End: Original strand, 25047254 - 25047338
Alignment:
Q  541 gacttacttgggagtattctagaccaagatatggaaaatctgtatgcatccaagttcatatccttcatgataccaacatcttcct 625  Q
    ||||||||||| |  | |||||||||||| ||||| ||||| || |||||||  ||||||| ||||||||| |||||||||||||    
T  25047254 gacttacttggtaagactctagaccaagaaatggagaatctataagcatccatattcatatacttcatgattccaacatcttcct 25047338  T

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Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 693 - 752
Target Start/End: Original strand, 24987851 - 24987910
Alignment:
Q  693 atgagtgaatgtatcccatatacttggtcctcttccaccttcacttgctgcaccttcata 752  Q
    ||||||||| |||||||| |||||||||||| ||||| |||||  |||||||||||||||    
T  24987851 atgagtgaaagtatcccaaatacttggtccttttccatcttcaaatgctgcaccttcata 24987910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 25000853 - 25000779
Alignment:
Q  11 actccatggctcattcaaagttatccaatgttttactctatctccaaatgttttaaagcaaagttccgcatagtc 85  Q
    ||||||||| ||||||||||| ||||||||||| || ||||| ||||||   || ||||||||||| ||||||||    
T  25000853 actccatggttcattcaaagtaatccaatgtttcaccctatcgccaaattccttgaagcaaagttcagcatagtc 25000779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 684 - 749
Target Start/End: Original strand, 25161083 - 25161148
Alignment:
Q  684 aggatatctatgagtgaatgtatcccatatacttggtcctcttccaccttcacttgctgcaccttc 749  Q
    ||||||||||||||| || || |||||||||||||||  ||| ||||||||  |||||||||||||    
T  25161083 aggatatctatgagtaaaggtgtcccatatacttggtgttctaccaccttctgttgctgcaccttc 25161148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 24986310 - 24986393
Alignment:
Q  11 actccatggctcattcaaagttatccaatgttttactctatctccaaatgttttaaagcaaagttccgcatagtcttgaaaatc 94  Q
    ||||||||| ||||||||||| ||||||||||| || ||||| ||||||   ||  |||||||||| |||||||| | ||||||    
T  24986310 actccatggttcattcaaagtaatccaatgtttcaccctatcaccaaattccttgtagcaaagttcagcatagtccttaaaatc 24986393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 685 - 752
Target Start/End: Original strand, 25048490 - 25048557
Alignment:
Q  685 ggatatctatgagtgaatgtatcccatatacttggtcctcttccaccttcacttgctgcaccttcata 752  Q
    |||||| |||||| ||| |||||||| |||||||||||| ||||| |||   ||||||||||||||||    
T  25048490 ggatatttatgagcgaaagtatcccaaatacttggtccttttccatctttttttgctgcaccttcata 25048557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 564 - 625
Target Start/End: Original strand, 4600902 - 4600963
Alignment:
Q  564 ccaagatatggaaaatctgtatgcatccaagttcatatccttcatgataccaacatcttcct 625  Q
    |||||||||||| ||||||||||||||    ||||||| |||||||||  ||||||||||||    
T  4600902 ccaagatatggagaatctgtatgcatctgtattcatatacttcatgattgcaacatcttcct 4600963  T

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Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 693 - 750
Target Start/End: Original strand, 25193119 - 25193176
Alignment:
Q  693 atgagtgaatgtatcccatatacttggtcctcttccaccttcacttgctgcaccttca 750  Q
    ||||||||| || ||||| |||||||||||||| ||||||||  || |||||||||||    
T  25193119 atgagtgaaggtgtcccagatacttggtcctctaccaccttcctttactgcaccttca 25193176  T

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Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 889 - 922
Target Start/End: Complemental strand, 25251771 - 25251738
Alignment:
Q  889 aagagagaaaataggagatatctcatgtttaatg 922  Q
    |||||||||||||||| |||||||||||||||||    
T  25251771 aagagagaaaataggaaatatctcatgtttaatg 25251738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 7e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 542 - 625
Target Start/End: Complemental strand, 30360341 - 30360258
Alignment:
Q  542 acttacttgggagtattctagaccaagatatggaaaatctgtatgcatccaagttcatatccttcatgataccaacatcttcct 625  Q
    |||||||||| |||||||||||||| || ||||| ||||| |||||||| || ||||||| ||||||||| |||||||||||||    
T  30360341 acttacttggtagtattctagaccatgagatggataatctatatgcatctaaattcatatacttcatgatcccaacatcttcct 30360258  T

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Target: chr3 (Bit Score: 48; Significance: 7e-18; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 182 - 269
Target Start/End: Complemental strand, 9213481 - 9213394
Alignment:
Q  182 actcacatgatgagaggacttaagaagccgccatattcatcttctagagtttgaggaagatcccagtgaaaaagagttacaaatggtt 269  Q
    |||||||  |||||||| ||||||||||| ||||| ||||||||||||||||| || |||||||| ||||||||||| || |||||||    
T  9213481 actcacactatgagagggcttaagaagccaccatactcatcttctagagtttgtgggagatcccaatgaaaaagagtcaccaatggtt 9213394  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 542 - 625
Target Start/End: Complemental strand, 9213122 - 9213039
Alignment:
Q  542 acttacttgggagtattctagaccaagatatggaaaatctgtatgcatccaagttcatatccttcatgataccaacatcttcct 625  Q
    |||||||||| | |||||||||||| |||| ||| |||||||||| |||||||||||| ||||| ||||| | |||||||||||    
T  9213122 acttacttggcaatattctagaccaggataaggagaatctgtatgaatccaagttcatgtccttgatgatcctaacatcttcct 9213039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 9213785 - 9213692
Alignment:
Q  8 gtaactccatggctcattcaaagttatccaatgttttactctatctccaaatgttttaaagcaaagttccgcatagtcttgaaaatcttttctg 101  Q
    |||||||||||| ||||||||||| | ||||| ||| || ||||| |||||    |||||||||||||| ||||||||||| ||||||||||||    
T  9213785 gtaactccatggttcattcaaagtaacccaatatttcaccctatcaccaaactccttaaagcaaagttcagcatagtcttggaaatcttttctg 9213692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 685 - 750
Target Start/End: Complemental strand, 9212670 - 9212605
Alignment:
Q  685 ggatatctatgagtgaatgtatcccatatacttggtcctcttccaccttcacttgctgcaccttca 750  Q
    |||||| |||| ||||| ||||||||||||||||||  ||| ||||||||| ||||||||||||||    
T  9212670 ggatatttatgggtgaaagtatcccatatacttggtgttctaccaccttcatttgctgcaccttca 9212605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 8090563 - 8090507
Alignment:
Q  196 aggacttaagaagccgccatattcatcttctagagtttgaggaagatcccagtgaaa 252  Q
    |||||| ||||| || |||||||||||||| |||| ||| |||||||||||||||||    
T  8090563 aggactcaagaaacctccatattcatcttcaagagcttgtggaagatcccagtgaaa 8090507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 7e-18; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 191 - 282
Target Start/End: Original strand, 42157004 - 42157095
Alignment:
Q  191 atgagaggacttaagaagccgccatattcatcttctagagtttgaggaagatcccagtgaaaaagagttacaaatggttgtaaacctgcaat 282  Q
    |||||||| ||||||||||||||||| || || |||| |||||||||||||||||| ||||| | |||||| |||||||||| |||| ||||    
T  42157004 atgagagggcttaagaagccgccatactcgtcctctaaagtttgaggaagatcccaatgaaataaagttacgaatggttgtagacctacaat 42157095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 546 - 625
Target Start/End: Complemental strand, 42290053 - 42289974
Alignment:
Q  546 acttgggagtattctagaccaagatatggaaaatctgtatgcatccaagttcatatccttcatgataccaacatcttcct 625  Q
    ||||||||| |||||||||||||| || || |||||||| |||||||| ||||||| ||||||||| |||||||||||||    
T  42290053 acttgggaggattctagaccaagagatcgagaatctgtaggcatccaaattcatattcttcatgatgccaacatcttcct 42289974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 175 - 281
Target Start/End: Original strand, 42167486 - 42167592
Alignment:
Q  175 ttgtgtcactcacatgatgagaggacttaagaagccgccatattcatcttctagagtttgaggaagatcccagtgaaaaagagttacaaatggttgtaaa 274  Q
    |||| ||||| |||| || ||||| ||||||||||| | ||| ||||| |||| || ||||||||||||||| ||||| |||||||| |||||||||| |    
T  42167486 ttgtatcacttacataataagagggcttaagaagccactatactcatcctctaaagcttgaggaagatcccaatgaaatagagttacgaatggttgtaga 42167585  T
Q  275 cctgcaa 281  Q
     ||||||    
T  42167586 tctgcaa 42167592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 191 - 282
Target Start/End: Complemental strand, 42290416 - 42290325
Alignment:
Q  191 atgagaggacttaagaagccgccatattcatcttctagagtttgaggaagatcccagtgaaaaagagttacaaatggttgtaaacctgcaat 282  Q
    |||||||| ||||||||||||||||| || |  |||| || ||||||||||||||| ||||| | |||||| |||||||||| |||| ||||    
T  42290416 atgagagggcttaagaagccgccatactcgttctctaaagcttgaggaagatcccaatgaaataaagttacgaatggttgtagacctacaat 42290325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 42167210 - 42167295
Alignment:
Q  16 atggctcattcaaagttatccaatgttttactctatctccaaatgttttaaagcaaagttccgcatagtcttgaaaatcttttctg 101  Q
    |||||||||| ||||| |||||||  || || |||||||||||   ||| || |||||||||||||||||||||||||| ||||||    
T  42167210 atggctcattgaaagtaatccaatacttcaccctatctccaaactctttgaaacaaagttccgcatagtcttgaaaatcatttctg 42167295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 546 - 625
Target Start/End: Original strand, 42157372 - 42157451
Alignment:
Q  546 acttgggagtattctagaccaagatatggaaaatctgtatgcatccaagttcatatccttcatgataccaacatcttcct 625  Q
    ||||||||  |||||||||||||| || || ||||| || |||||||| ||||||| | ||||||| |||||||||||||    
T  42157372 acttgggacgattctagaccaagagattgagaatctataagcatccaaattcatattcctcatgatgccaacatcttcct 42157451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 42290656 - 42290572
Alignment:
Q  16 atggctcattcaaagttatccaatgttttactctatctccaaatgttttaaagcaaagttccgcatagtcttgaaaatcttttct 100  Q
    |||||||||| ||||| |||||||  || || |||||||||||   ||| || ||||||||||| |||||||||||||| |||||    
T  42290656 atggctcattgaaagtgatccaatacttcaccctatctccaaactctttgaaacaaagttccgcgtagtcttgaaaatcatttct 42290572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 546 - 625
Target Start/End: Original strand, 42167879 - 42167958
Alignment:
Q  546 acttgggagtattctagaccaagatatggaaaatctgtatgcatccaagttcatatccttcatgataccaacatcttcct 625  Q
    ||||||||| ||||  |||||||| || || |||||||| ||||| || ||||||| | ||||||| |||||||||||||    
T  42167879 acttgggaggattcgggaccaagagattgagaatctgtaagcatctaaattcatattcctcatgatgccaacatcttcct 42167958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 97
Target Start/End: Complemental strand, 29423029 - 29422946
Alignment:
Q  14 ccatggctcattcaaagttatccaatgttttactctatctccaaatgttttaaagcaaagttccgcatagtcttgaaaatcttt 97  Q
    |||||| |||||||  || ||||||||||||||||| || || |||  |||||||||||| |||||||||||| ||||||||||    
T  29423029 ccatggttcattcagtgtgatccaatgttttactctgtccccgaattctttaaagcaaagctccgcatagtctcgaaaatcttt 29422946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 29460043 - 29460124
Alignment:
Q  13 tccatggctcattcaaagttatccaatgttttactctatctccaaatgttttaaagcaaagttccgcatagtcttgaaaatc 94  Q
    ||||||| |||||||| || |||||||| ||||| ||||||||||||  |||||| ||||| ||  ||||||||||||||||    
T  29460043 tccatggttcattcaatgtgatccaatgctttaccctatctccaaattctttaaaacaaagctctacatagtcttgaaaatc 29460124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 197 - 270
Target Start/End: Original strand, 29460231 - 29460304
Alignment:
Q  197 ggacttaagaagccgccatattcatcttctagagtttgaggaagatcccagtgaaaaagagttacaaatggttg 270  Q
    |||||||| ||||| |||||||||||||| || || |||||||| ||||| ||||||||||| ||||| |||||    
T  29460231 ggacttaaaaagccaccatattcatcttcaagtgtctgaggaaggtcccaatgaaaaagagtcacaaagggttg 29460304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 544 - 625
Target Start/End: Complemental strand, 29405711 - 29405630
Alignment:
Q  544 ttacttgggagtattctagaccaagatatggaaaatctgtatgcatccaagttcatatccttcatgataccaacatcttcct 625  Q
    |||||||| | |||||| |||||||| || || |||||||| ||||||| |||||| |||||||||||  | ||||||||||    
T  29405711 ttacttggcaatattcttgaccaagagattgagaatctgtaagcatccatgttcatgtccttcatgatctcgacatcttcct 29405630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 270
Target Start/End: Complemental strand, 29422860 - 29422787
Alignment:
Q  197 ggacttaagaagccgccatattcatcttctagagtttgaggaagatcccagtgaaaaagagttacaaatggttg 270  Q
    |||||||| ||||| | |||||||||||| || ||||||||||| ||||| |||||||| || ||||| |||||    
T  29422860 ggacttaaaaagccactatattcatcttcaagtgtttgaggaaggtcccaatgaaaaagggtcacaaagggttg 29422787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 692 - 752
Target Start/End: Complemental strand, 29421090 - 29421030
Alignment:
Q  692 tatgagtgaatgtatcccatatacttggtcctcttccaccttcacttgctgcaccttcata 752  Q
    |||| ||||| ||||||||||||||||||||| |||||||   | ||||||||||||||||    
T  29421090 tatgcgtgaaagtatcccatatacttggtccttttccaccaatatttgctgcaccttcata 29421030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 692 - 731
Target Start/End: Original strand, 29462162 - 29462201
Alignment:
Q  692 tatgagtgaatgtatcccatatacttggtcctcttccacc 731  Q
    |||| ||||| |||||||||||||||||||||||||||||    
T  29462162 tatgtgtgaaagtatcccatatacttggtcctcttccacc 29462201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 543 - 625
Target Start/End: Complemental strand, 29422276 - 29422194
Alignment:
Q  543 cttacttgggagtattctagaccaagatatggaaaatctgtatgcatccaagttcatatccttcatgataccaacatcttcct 625  Q
    ||||||||| |||||||| |||||||| ||||||||||| || ||||||| ||| || || |||| ||   ||||||||||||    
T  29422276 cttacttggaagtattctggaccaagagatggaaaatctataagcatccatgttgatgtctttcacgagctcaacatcttcct 29422194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 543 - 625
Target Start/End: Original strand, 29461205 - 29461287
Alignment:
Q  543 cttacttgggagtattctagaccaagatatggaaaatctgtatgcatccaagttcatatccttcatgataccaacatcttcct 625  Q
    ||||||||| ||||| || |||||||| || |||||||| || ||||||| ||| || || ||||||||  ||||||||||||    
T  29461205 cttacttggaagtatcctggaccaagagatagaaaatctataagcatccatgttgatgtctttcatgatctcaacatcttcct 29461287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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