View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4639-Insertion-10 (Length: 346)
Name: NF4639-Insertion-10
Description: NF4639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4639-Insertion-10 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 10 - 346
Target Start/End: Complemental strand, 31245603 - 31245265
Alignment:
| Q |
10 |
tagatctatcttttaatagactatggagttaatgtaccagtgaaaataagttttattcttagatctatgatttttatgttggtgttgttaaaatttagtg |
109 |
Q |
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| T |
31245603 |
tagatctatcttttaatagactatagagttaatgtaccagtgaaaataagttttattcttagatctatgatttttatgttggtgttgttaaaatttagtg |
31245504 |
T |
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| Q |
110 |
gtttgctatgacgacgttttaccccggtgcttaggtttgatctcaaatttcaaccctccccttctcatgtgagtgtg--tgtggggcatctagacaagtc |
207 |
Q |
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| T |
31245503 |
gtttgctatgacgacgttttacgccggtgcttaggtttgatctcaaatttcaaccctccccttctcatgtgagtgtgtgtgtggggcatctagacaagtc |
31245404 |
T |
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| Q |
208 |
atatataaaaaatggcttttttaagaatataactttatgacattttaatttaattccattttacaacaatgcctttagatatgtcaaaaattgatgtagg |
307 |
Q |
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| T |
31245403 |
atatataaaaaatggcttttttaagaatataactttatgacattttaatttaattccattttacaacaatgcctttagatatgtcaaaaattgatgtagg |
31245304 |
T |
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| Q |
308 |
ctaatattattaaattattgaaaaagttaatttgatata |
346 |
Q |
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| T |
31245303 |
ctaatattattaaattattgaaaaagttaatttgatata |
31245265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 20 - 346
Target Start/End: Complemental strand, 30417354 - 30417030
Alignment:
| Q |
20 |
ttttaatagactatggagttaatgtaccagtgaaaataagttttattcttagatctatgatttttatgttggtgttgttaaaatttagtggtttgctatg |
119 |
Q |
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| T |
30417354 |
ttttaatagactaaagagttaatgtaccagtgaaaataagttttattcttagatctatgatttttatgttggtgttgttaaaatttagtggtttgctatg |
30417255 |
T |
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| Q |
120 |
acgacgttttaccccggtgcttaggtttgatctcaaatttcaaccct--ccccttctcatgtgagtgtgtgtggggcatctagacaagtcatatataaaa |
217 |
Q |
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| T |
30417254 |
acaacatttcacgcctgtgcttaggtttgttctcaaatttcaaccctcgccccttatcatgtgaatgtgtgtgtggcatctagacaagtcatatataaaa |
30417155 |
T |
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| Q |
218 |
aatggcttttttaagaatataactt--tatgacattttaatttaattccattttacaacaatgcctttagatatgtcaaaaattgatgtaggctaatatt |
315 |
Q |
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| T |
30417154 |
gatggcttcttaaagaatataactttatatgacattttacttttattccattttacaacaatgc------atatgtcaaaatttgatgtaagctaatatc |
30417061 |
T |
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| Q |
316 |
attaaattattgaaaaagttaatttgatata |
346 |
Q |
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| T |
30417060 |
attaaattattgaaaaagttaatttgatata |
30417030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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