View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4639-Insertion-11 (Length: 342)

Name: NF4639-Insertion-11
Description: NF4639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4639-Insertion-11
NF4639-Insertion-11
[»] chr1 (1 HSPs)
chr1 (8-342)||(42302493-42302816)


Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 8 - 342
Target Start/End: Complemental strand, 42302816 - 42302493
Alignment:
Q  8 atattgacatttagagtaacgtccctaagcattttggaacggtgatgacccaatttggatttgatctaaggtgcaggctgtgagaacagaataattaaaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42302816 atattgacatttagagtaacgtccctaagcattttggaacggtgatgacccaatttggatttgatctaaggtgcaggctgtgagaacagaataattaaaa 42302717  T
Q  108 tagctaggtttgttgaaatgttggcaccacctttattattatttcctcaaaagaaaagacaagattgtcacttaattattactattatggatctgtaagg 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||    
T  42302716 tagctaggtttgttgaaatgttggcaccacctttattattatttcctcaaaagaaaagacaagattgtc-----------actattatggatctgtaagg 42302628  T
Q  208 aacatttctatttctattgattataatttctaaggttctaacactattctaaaaaagtatatcttcgatttagtcgtatctcatcaaattagtttctaat 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||     
T  42302627 aacatttctatttctattgattataatttctaaggttctaacactattctaaaaaaatatatcttcgatttagtcgtatctcatcaaattagtttctaaa 42302528  T
Q  308 gtatagtataaaccttattctctaatttttcttta 342  Q
    |||||||||||||||||||||||||||||||||||    
T  42302527 gtatagtataaaccttattctctaatttttcttta 42302493  T

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