View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4639-Insertion-12 (Length: 147)

Name: NF4639-Insertion-12
Description: NF4639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4639-Insertion-12
NF4639-Insertion-12
[»] chr3 (1 HSPs)
chr3 (29-131)||(30603432-30603534)
[»] chr2 (4 HSPs)
chr2 (39-105)||(34341225-34341291)
chr2 (37-103)||(34415456-34415522)
chr2 (37-98)||(40186094-40186155)
chr2 (63-98)||(32122608-32122643)
[»] chr8 (2 HSPs)
chr8 (56-116)||(34749940-34750000)
chr8 (70-131)||(35395025-35395086)
[»] chr4 (5 HSPs)
chr4 (44-104)||(38943152-38943212)
chr4 (41-104)||(56335552-56335614)
chr4 (63-116)||(16972784-16972837)
chr4 (75-131)||(47261514-47261570)
chr4 (65-104)||(27059415-27059454)
[»] chr5 (4 HSPs)
chr5 (37-104)||(27689829-27689896)
chr5 (37-104)||(31573875-31573942)
chr5 (63-105)||(10134297-10134339)
chr5 (37-116)||(13063441-13063520)
[»] chr1 (2 HSPs)
chr1 (63-91)||(48181823-48181851)
chr1 (37-84)||(10221667-10221714)
[»] chr7 (2 HSPs)
chr7 (60-91)||(139026-139057)
chr7 (60-143)||(35375774-35375857)


Alignment Details
Target: chr3 (Bit Score: 95; Significance: 8e-47; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 8e-47
Query Start/End: Original strand, 29 - 131
Target Start/End: Original strand, 30603432 - 30603534
Alignment:
Q  29 gttctcagtgcaccgacaatttttgttgttcacaacgcacataaacttctataaattagtgtgtttggtttatttgtaatccacaccataaatacatgaa 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  30603432 gttctcagtgcaccgacaatttttgttgttcacaacgcacataaacttctataaattagtgtgttttgttcatttgtaatccacaccataaatacatgaa 30603531  T
Q  129 cac 131  Q
    |||    
T  30603532 cac 30603534  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 105
Target Start/End: Complemental strand, 34341291 - 34341225
Alignment:
Q  39 caccgacaatttttgttgttcacaacgcacataaacttctataaattagtgtgtttggtttatttgt 105  Q
    |||||||||||||||| || ||| ||||||| |||||| |||||||| |||||||||||| ||||||    
T  34341291 caccgacaatttttgtggtccacgacgcacaaaaacttgtataaattggtgtgtttggttcatttgt 34341225  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 37 - 103
Target Start/End: Original strand, 34415456 - 34415522
Alignment:
Q  37 tgcaccgacaatttttgttgttcacaacgcacataaacttctataaattagtgtgtttggtttattt 103  Q
    |||||| ||||||| ||| || ||| ||||||| |||||||||||||||||||||||||||| ||||    
T  34415456 tgcaccaacaatttctgtggtccacgacgcacaaaaacttctataaattagtgtgtttggttcattt 34415522  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 37 - 98
Target Start/End: Complemental strand, 40186155 - 40186094
Alignment:
Q  37 tgcaccgacaatttttgttgttcacaacgcacataaacttctataaattagtgtgtttggtt 98  Q
    |||||||||||||| ||| || ||| ||||||||   |||||| ||||||||||||||||||    
T  40186155 tgcaccgacaatttatgtggtccacgacgcacattgccttctaaaaattagtgtgtttggtt 40186094  T

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Target: chr2; HSP #4
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 63 - 98
Target Start/End: Original strand, 32122608 - 32122643
Alignment:
Q  63 acgcacataaacttctataaattagtgtgtttggtt 98  Q
    ||||||||||||||||||||| ||||||||| ||||    
T  32122608 acgcacataaacttctataaactagtgtgttcggtt 32122643  T

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Target: chr8 (Bit Score: 33; Significance: 0.0000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 34749940 - 34750000
Alignment:
Q  56 gttcacaacgcacataaacttctataaattagtgtgtttggtttatttgtaatccacacca 116  Q
    |||||| | |||||||||||||||||||||| ||||||| ||| |||||||| ||| ||||    
T  34749940 gttcacgatgcacataaacttctataaattattgtgtttagttcatttgtaaaccagacca 34750000  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 35395086 - 35395025
Alignment:
Q  70 taaacttctataaattagtgtgtttggtttatttgtaatccacaccataaatacatgaacac 131  Q
    |||||||||||||||| |||||||||||||| ||| ||  || ||||||||  |||||||||    
T  35395086 taaacttctataaattggtgtgtttggtttaattgcaaatcaaaccataaaaccatgaacac 35395025  T

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Target: chr4 (Bit Score: 33; Significance: 0.0000000008; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 44 - 104
Target Start/End: Complemental strand, 38943212 - 38943152
Alignment:
Q  44 acaatttttgttgttcacaacgcacataaacttctataaattagtgtgtttggtttatttg 104  Q
    |||| |||||| || ||||||||||| || |||||||||||| |||||||||||| |||||    
T  38943212 acaaattttgtggtccacaacgcacaaaaccttctataaattggtgtgtttggttcatttg 38943152  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 104
Target Start/End: Complemental strand, 56335614 - 56335552
Alignment:
Q  41 ccgacaatttttgttgttcacaacgcacataaacttctataaattagtgtgtttggtttatttg 104  Q
    |||||||||| |||  || ||||||||||||| |||||||||||| |||||||||||| |||||    
T  56335614 ccgacaatttatgtgatttacaacgcacataa-cttctataaatttgtgtgtttggttcatttg 56335552  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 63 - 116
Target Start/End: Complemental strand, 16972837 - 16972784
Alignment:
Q  63 acgcacataaacttctataaattagtgtgtttggtttatttgtaatccacacca 116  Q
    |||||||||||||| |||| ||| |||||||||||| ||||| || ||||||||    
T  16972837 acgcacataaacttatatatattggtgtgtttggttcatttgcaaaccacacca 16972784  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 131
Target Start/End: Complemental strand, 47261570 - 47261514
Alignment:
Q  75 ttctataaattagtgtgtttggtttatttgtaatccacaccataaatacatgaacac 131  Q
    |||||||||||||||| |||||||  ||||||||||||| |||| |  |||||||||    
T  47261570 ttctataaattagtgtatttggttcgtttgtaatccacatcatagaaccatgaacac 47261514  T

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Target: chr4; HSP #5
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 65 - 104
Target Start/End: Original strand, 27059415 - 27059454
Alignment:
Q  65 gcacataaacttctataaattagtgtgtttggtttatttg 104  Q
    ||||| ||||||||||||||| |||||||||||| |||||    
T  27059415 gcacaaaaacttctataaattggtgtgtttggttcatttg 27059454  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 104
Target Start/End: Original strand, 27689829 - 27689896
Alignment:
Q  37 tgcaccgacaatttttgttgttcacaacgcacataaacttctataaattagtgtgtttggtttatttg 104  Q
    ||||| |||| ||||||| || ||| ||||||| |||||||||||||| |||||||||| || |||||    
T  27689829 tgcactgacagtttttgtggtccacgacgcacaaaaacttctataaataagtgtgtttgattcatttg 27689896  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 104
Target Start/End: Original strand, 31573875 - 31573942
Alignment:
Q  37 tgcaccgacaatttttgttgttcacaacgcacataaacttctataaattagtgtgtttggtttatttg 104  Q
    |||||||||||||||| |  ||||| | ||||||| | ||||||||||| |||||||||||| |||||    
T  31573875 tgcaccgacaatttttatgcttcacgatgcacatagaattctataaattggtgtgtttggttcatttg 31573942  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 105
Target Start/End: Original strand, 10134297 - 10134339
Alignment:
Q  63 acgcacataaacttctataaattagtgtgtttggtttatttgt 105  Q
    |||||||||||||||||||||| |||||| |||||| ||||||    
T  10134297 acgcacataaacttctataaataagtgtgcttggttcatttgt 10134339  T

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Target: chr5; HSP #4
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 37 - 116
Target Start/End: Complemental strand, 13063520 - 13063441
Alignment:
Q  37 tgcaccgacaatttttgttgttcacaacgcacataaacttctataaattagtgtgtttggtttatttgtaatccacacca 116  Q
    |||||||||  ||||||| || |||||| ||||||| |||||||||||| || ||||  ||| ||||| || ||||||||    
T  13063520 tgcaccgacggtttttgtggtccacaacacacataaccttctataaattggtttgttaagttcatttgcaaaccacacca 13063441  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 91
Target Start/End: Original strand, 48181823 - 48181851
Alignment:
Q  63 acgcacataaacttctataaattagtgtg 91  Q
    |||||||||||||||||||||||||||||    
T  48181823 acgcacataaacttctataaattagtgtg 48181851  T

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Target: chr1; HSP #2
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 37 - 84
Target Start/End: Original strand, 10221667 - 10221714
Alignment:
Q  37 tgcaccgacaatttttgttgttcacaacgcacataaacttctataaat 84  Q
    |||||||||||||||||| ||||||||||| || | || |||||||||    
T  10221667 tgcaccgacaatttttgtggttcacaacgcccacatacctctataaat 10221714  T

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Target: chr7 (Bit Score: 28; Significance: 0.0000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 91
Target Start/End: Complemental strand, 139057 - 139026
Alignment:
Q  60 acaacgcacataaacttctataaattagtgtg 91  Q
    |||||||||||||||||||||||||| |||||    
T  139057 acaacgcacataaacttctataaattggtgtg 139026  T

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Target: chr7; HSP #2
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 143
Target Start/End: Original strand, 35375774 - 35375857
Alignment:
Q  60 acaacgcacataaacttctataaattagtgtgtttggtttatttgtaatccacaccataaatacatgaacacatattcagtaga 143  Q
    |||| ||||| || |||||||||||| |||||||||||| ||||| || ||||| || |||  ||||||||  ||| |||||||    
T  35375774 acaatgcacaaaaccttctataaatttgtgtgtttggttcatttgcaaaccacatcacaaaatcatgaacaattatccagtaga 35375857  T

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