View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4639-Insertion-13 (Length: 101)
Name: NF4639-Insertion-13
Description: NF4639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4639-Insertion-13 |
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| [»] scaffold0635 (1 HSPs) |
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Alignment Details
Target: scaffold0635 (Bit Score: 59; Significance: 2e-25; HSPs: 1)
Name: scaffold0635
Description:
Target: scaffold0635; HSP #1
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 3289 - 3227
Alignment:
| Q |
7 |
aatagaatggaagtgatgacattattccatctcatactatttttcattaaaatttcaccataa |
69 |
Q |
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| T |
3289 |
aatagaatggaaatgatgacattattccatctcatactatttttcattaaaatttcaccataa |
3227 |
T |
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Target: chr2 (Bit Score: 59; Significance: 2e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 7 - 69
Target Start/End: Original strand, 10043781 - 10043843
Alignment:
| Q |
7 |
aatagaatggaagtgatgacattattccatctcatactatttttcattaaaatttcaccataa |
69 |
Q |
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| T |
10043781 |
aatagaatggaaatgatgacattattccatctcatactatttttcattaaaatttcaccataa |
10043843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 7 - 69
Target Start/End: Original strand, 10105495 - 10105557
Alignment:
| Q |
7 |
aatagaatggaagtgatgacattattccatctcatactatttttcattaaaatttcaccataa |
69 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10105495 |
aatagaatggaaatgatgacattattccatctcatactatttttcattaaaatttcaccataa |
10105557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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