View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4639-Insertion-2 (Length: 1045)
Name: NF4639-Insertion-2
Description: NF4639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4639-Insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 565; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 46 - 791
Target Start/End: Original strand, 27493297 - 27494043
Alignment:
| Q |
46 |
aatgcaggtcacttttatgtgtatgttcacttttattttctctagtaggctgatgtatttagctacactgagtaactaaacactataaattattattttt |
145 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||| | ||||||||||||| |
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| T |
27493297 |
aatgcaggtcacttttatgtgaatgttcacttttattttctctaga---ctgatctatttagctacagtgagtaactaaacactgtcaattattattttt |
27493393 |
T |
|
| Q |
146 |
ctttgaacctctttttaatcgttggatccatgtgattatggttattccttttattgatgcaatttgaattatgattatttactatatcttgttcttaatg |
245 |
Q |
| |
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|||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
27493394 |
ctttgaacatctttttaatcgttggatccacgtgatcatggttattccttttattgatgcaatttgaattatgattatttactgtatcttgttcttaatg |
27493493 |
T |
|
| Q |
246 |
cttttcaagttttgaccaacttgaatcaaatcta--ggttgtaactcactattggccgtaggttttgtaatcggaactagatatattagtcaataggata |
343 |
Q |
| |
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|||| || ||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||| |||||||||||||||| ||||||| |
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| T |
27493494 |
ttttttaatttttgaccaacttgaatcaaatctataggttgtaaatcactattggccgttggttttgtaatcggatctagatatattagtcactaggata |
27493593 |
T |
|
| Q |
344 |
atttccttagagatcatgagtatgcttagcatgactttgtctaacacttttgagaatataagtctgctaccaaccctagggagaaaaatcccgagaaggg |
443 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||| |
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| T |
27493594 |
atttccttagagatcatgagtatgcttagcatgactttgtctaacacttttgagaatataagtctgctaccaaccctagggagaaaaattccaagatggg |
27493693 |
T |
|
| Q |
444 |
attgccactcgtaaacgggataggtctactttcttagtcgttgtgagcataaacttgaaattttagataaactaggaattggatttacccaacgaataga |
543 |
Q |
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|
| T |
27493694 |
attgccacttgtaaacgggataggtctactttcttagtcgttgtgagcgtaaacttgaaattttagataaactagaaactggatttatccaacgaatagt |
27493793 |
T |
|
| Q |
544 |
gagatggaattcaaggaatcataatcgctttcaacattatgattgactttcttttaattttctttgcaacac-aaggcacacattattagagggctgtca |
642 |
Q |
| |
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||||| | |||||||||||||||||| |||| ||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||| ||| |
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|
| T |
27493794 |
gagataggattcaaggaatcataatcacttttaacattatgattgactttctttttattttcattgcaacacaaaggcacacattattagagggctttca |
27493893 |
T |
|
| Q |
643 |
tgtgttatcacttggcttaggtaagggatggacatttttggagtagtgttaaattagagttagg-ttctactacttattcttgatctattaagtatctcc |
741 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||| |
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| T |
27493894 |
tgtgttatcacttggcttaggtaaggggtggacatttttggagtagtgttaaattagagttaggtttctactgcttattcttgatctattaggtatctcc |
27493993 |
T |
|
| Q |
742 |
accactactaagcaattgtgcctttatcatttcataatgggtacaaagag |
791 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27493994 |
accactactaagcaattgtgcctttatcatttcataatgggtacaaagag |
27494043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 905 - 1042
Target Start/End: Original strand, 27494143 - 27494276
Alignment:
| Q |
905 |
tactccacctccatcttagaatgttgttaattccagaagcaatcctcaacttaattttaagcctacggaatttttgtttttattccttcta-ctgacttt |
1003 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| | |||||| |||||||| |
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|
| T |
27494143 |
tactccacctccatcttagaatgttgttaattctagaagcaatcctcaacttaattttaagcctacggaattt---tttttaattcttctacctgacttt |
27494239 |
T |
|
| Q |
1004 |
atataggatagaccaccatccaaaataattatgaaggtc |
1042 |
Q |
| |
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|||||||||| | || ||| ||||||||||||||||||| |
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|
| T |
27494240 |
atataggata-aacaacat-caaaataattatgaaggtc |
27494276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 27493060 - 27493097
Alignment:
| Q |
10 |
ttttaccagacaatcatggtccatggattatttcagaa |
47 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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|
| T |
27493060 |
ttttaccagacaatcatggtccatggattatttcagaa |
27493097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 202 - 258
Target Start/End: Original strand, 26884144 - 26884200
Alignment:
| Q |
202 |
atgcaatttgaattatgattatttactatatcttgttcttaatgcttttcaagtttt |
258 |
Q |
| |
|
||||||||||||||||| ||||||| || |||||||| |||||| ||||||| |||| |
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|
| T |
26884144 |
atgcaatttgaattatgtttatttattaaatcttgtttttaatgtttttcaattttt |
26884200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 237
Target Start/End: Original strand, 45702526 - 45702569
Alignment:
| Q |
194 |
ttttattgatgcaatttgaattatgattatttactatatcttgt |
237 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||||| |
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|
| T |
45702526 |
ttttattgatgcaatttgaattatgcttattttatatatcttgt |
45702569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 199 - 253
Target Start/End: Complemental strand, 9848744 - 9848690
Alignment:
| Q |
199 |
ttgatgcaatttgaattatgattatttactatatcttgttcttaatgcttttcaa |
253 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||||||||| ||||||| |
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|
| T |
9848744 |
ttgatgcaatttgaattatgattgtttaatatatcttgttcttaatgtttttcaa |
9848690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 202 - 313
Target Start/End: Complemental strand, 32494196 - 32494084
Alignment:
| Q |
202 |
atgcaatttgaattatgattatttactatatcttgttcttaatgcttttcaagttttgaccaac-ttgaatcaaatctaggttgtaactcactattggcc |
300 |
Q |
| |
|
|||||||| ||||||| ||||||| |||||||||||||||||||||||||| || | |||| |||||| || ||||||||| | |||||||| ||| |
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|
| T |
32494196 |
atgcaattcaaattatgtttatttaatatatcttgttcttaatgcttttcaatttcacatcaactttgaattgaacctaggttgtgaatcactattagcc |
32494097 |
T |
|
| Q |
301 |
gtaggttttgtaa |
313 |
Q |
| |
|
|||||||||||| |
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|
| T |
32494096 |
ctaggttttgtaa |
32494084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 226
Target Start/End: Original strand, 10572376 - 10572412
Alignment:
| Q |
190 |
ttccttttattgatgcaatttgaattatgattattta |
226 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |
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|
| T |
10572376 |
ttccttttattgatgcaatttgaattatgtttattta |
10572412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 249
Target Start/End: Complemental strand, 22472087 - 22472037
Alignment:
| Q |
199 |
ttgatgcaatttgaattatgattatttactatatcttgttcttaatgcttt |
249 |
Q |
| |
|
||||||||||||||||||| ||||||| | ||||||||||||||||||| |
|
|
| T |
22472087 |
ttgatgcaatttgaattatatttatttaagaaatcttgttcttaatgcttt |
22472037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 708 - 775
Target Start/End: Original strand, 46965876 - 46965943
Alignment:
| Q |
708 |
tctactacttattcttgatctattaagtatctccaccactactaagcaattgtgcctttatcatttca |
775 |
Q |
| |
|
||||||||| |||||||||||||||| ||| ||||| | ||| ||||| ||||||||| |||| |||| |
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|
| T |
46965876 |
tctactactcattcttgatctattaaatatttccacgattaccaagcacttgtgccttaatcaattca |
46965943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 250
Target Start/End: Original strand, 7888432 - 7888483
Alignment:
| Q |
199 |
ttgatgcaatttgaattatgattatttactatatcttgttcttaatgctttt |
250 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| | |||| ||| ||||||| |
|
|
| T |
7888432 |
ttgatgcaatttgaattatgcttatttactataacctgtttttactgctttt |
7888483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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