View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4639-Insertion-3 (Length: 1030)
Name: NF4639-Insertion-3
Description: NF4639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4639-Insertion-3 |
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Alignment Details
Target: chr7 (Bit Score: 840; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 840; E-Value: 0
Query Start/End: Original strand, 8 - 899
Target Start/End: Original strand, 43918280 - 43919171
Alignment:
| Q |
8 |
catggttctctttaaatgaagaattttcctcatgagcttgtttcaaatcactcaaagatgcatcaaacacgttctctggttggtgagcatcactgaaatg |
107 |
Q |
| |
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|||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
43918280 |
catgattctctttaaatgaagaattttccttatgagcttgttttaaatcactcaaagatgcatcaaacatgttctttggttggtgagcatcactgaaatg |
43918379 |
T |
|
| Q |
108 |
aaatccgacaggggacagattggctaaagcacccatagcttcagcagctatttgagtgtctaagccaatatcagacatgtcttctgtacctgctacacta |
207 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43918380 |
aaagccgacaggggacagattggctaaagcacccatagcttcagcagctatttgagtgtctaagccaatatcagacatgtcttctgtacctgctacacta |
43918479 |
T |
|
| Q |
208 |
gaataaatatcaacaccgtctcttgtggcacacgactcaacatacaactccttgagagagttattattgtcaattgccattgttggttcttggactaaat |
307 |
Q |
| |
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||||||||||||||| ||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43918480 |
gaataaatatcaacatcgtctcttgcggcacgcgactcaacatacaactctttgagagagttattattgtcaattgccattgttggttcttggactaaat |
43918579 |
T |
|
| Q |
308 |
tctcatcactatagtttccttggttctcatcacatccattacttgcactacattttccttggttctgaagacgactacctttttgctgtcttcctctctt |
407 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
43918580 |
tctcatcactatagtttccttggttctcatcacatccattacttgcactacattttccttggttctgaagacgactacctttttgctgttttcttctctt |
43918679 |
T |
|
| Q |
408 |
atacgtcagtccatggcttccaaaattgaaagatgcttcaagttttttacagaaaataccagcttcttttaaattttgatccttgtcagcccatttgaat |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43918680 |
atacgtcagtccatggcttccaaaattgaaagatgcttcaagttttttacagaaaataccagcttcttttaaattttgatccttgtcagcccatttgaat |
43918779 |
T |
|
| Q |
508 |
gggtctttatcttcattttgcgtttgagctttaactttcttagccagactaatcgatcctctcgcactcgagacttgaggtgacttctccatagcaatct |
607 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43918780 |
gggtctttatcttcattttgcgtttgagctttaactttcttagccagactaatcgatcctctcgcactcgagacttgaggtgacttctccatagcaatct |
43918879 |
T |
|
| Q |
608 |
ttccattttgaaatccttgaaatagacccacatctattgatgacaagtactgatccacgaaacctagtgcagctacggttggtgagtgagcatcatatga |
707 |
Q |
| |
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| T |
43918880 |
ttccattttgaaatccttgaaatagatccacatctattgatgacaagtactgatccacgaaacctagtgcagctacggttggtgagtgagcatcatatga |
43918979 |
T |
|
| Q |
708 |
catagcaggtggatattgatggttgttgtcatcaaagctctcagcatcatttgaagctcctttgtcaccttcaagcacattatgtttttcaaatgtcaat |
807 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43918980 |
catagcaggtggatattgatggttgttgtcatcaaagctctcagcatcatttgaagctcctttgtcaccttcaagcacattatgtttttcaaatgtcaat |
43919079 |
T |
|
| Q |
808 |
cattcatgaaatgctctagaaattgcatttacttggtaaactacttattaataaggtatttatcacggtaagttaaagcaagaatagttcac |
899 |
Q |
| |
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| T |
43919080 |
cattcatgaaatgctctagaaattgcatttacttggtaaactacttattaataaggtatttatcacggtaagttaaagcaagaatagttcac |
43919171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 941 - 1030
Target Start/End: Original strand, 43919212 - 43919302
Alignment:
| Q |
941 |
tcttgatgttaaatggctgtgataaaaattagaaaacaaataccagtaccagttttcccacaagttgt-gcatttgattttgagttatctt |
1030 |
Q |
| |
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| T |
43919212 |
tcttaatgttaaatggctgtgataaaaattagaaaacacataccagtaccagttttcccacaagttgtggcatttgattttgagttatctt |
43919302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 537; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 17 - 750
Target Start/End: Original strand, 53105569 - 53106318
Alignment:
| Q |
17 |
ctttaaatgaagaattttcctcatgagctt-gtttcaaatcactcaaagatgcatcaaacacgttctctggttggtgagcatcactgaaatgaaatccga |
115 |
Q |
| |
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|||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
53105569 |
ctttaaatgaagaatttttctgatgagctttgtttcaaatcactcaaagatgcatcaaacacgttctctggttggtgagcatcactaaaatgaaagccgg |
53105668 |
T |
|
| Q |
116 |
caggggacagattggctaaagcacccatagcttcagcagctatttgagtgtctaagccaatatcagacatgtcttctgtacctgctacactagaataaat |
215 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| | |||||| |
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| T |
53105669 |
caggggacagattggctaaagcatccatagcttcagcagctatttgagtgtctaagccaatatcag-catgtcttctgtatgtgctacacttgtataaat |
53105767 |
T |
|
| Q |
216 |
atcaacaccgtctcttgtggcacacgactcaacatacaactccttgagagagttattattgtcaattgccattgttggttcttggactaaattctcatca |
315 |
Q |
| |
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||||||| || |||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
53105768 |
atcaacatcgcctcttgcggcacatgactcaacatacaactccttgagagagttattattgtcagttgccattgttggttcttggactaaattctcatca |
53105867 |
T |
|
| Q |
316 |
c---------------tatagtttccttggttctcatcacatccattacttgcactacattttccttggttctgaagacgactacctttttgctgtcttc |
400 |
Q |
| |
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| T |
53105868 |
cattgattacttgcactatagtttccttggttctcatcacatccattacttgcactacattttccttggttctgaagacgactacctttttgctgtcttc |
53105967 |
T |
|
| Q |
401 |
ctctcttatacgtcagtccatggcttccaaaattgaaagatgcttcaagttttttacagaaaataccagcttcttttaaattttgatccttgtcagccc- |
499 |
Q |
| |
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||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
53105968 |
ttctgttatacgtcagtccatggcttccaaaactgaaagatgcttcaagttttttacagaaaataccagcttcttttaaattttgatcactgtcagcccc |
53106067 |
T |
|
| Q |
500 |
atttgaatgggtctttatcttcattttgcgtttgagctttaactttcttagccagactaatcgatcctctcgcactcgagacttgaggtgacttctccat |
599 |
Q |
| |
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|||||| |||||||||||||||| ||||||| ||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
53106068 |
atttgagtgggtctttatcttcactttgcgtccgagctttaaatttcttagccagactaattgatcctcttgcactcgagacttgaggtgacttctccat |
53106167 |
T |
|
| Q |
600 |
agcaatctttccattttgaaatccttgaaatagacccacatctattgatgacaagtactgatccacgaaacctagtgcagctacggttggtgagtgagca |
699 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
53106168 |
tgcaatctttccattttgaaatccttgaaatagatccacatctatctgtgacaagtactgatccacaaagcctagtgcagctacggttggtgagtgagca |
53106267 |
T |
|
| Q |
700 |
tcatatgacatagcaggtggatattgatggttgttgtcatcaaagctctca |
750 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
53106268 |
tcatatgacatagcaggtagatattgatggttgttgtcatcaaagctctca |
53106318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 772 - 817
Target Start/End: Original strand, 53106316 - 53106361
Alignment:
| Q |
772 |
tcaccttcaagcacattatgtttttcaaatgtcaatcattcatgaa |
817 |
Q |
| |
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|||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
53106316 |
tcaccttcaagcacattatgttttcgaaaattcaatcattcatgaa |
53106361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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