View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4639-Insertion-4 (Length: 1026)

Name: NF4639-Insertion-4
Description: NF4639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4639-Insertion-4
NF4639-Insertion-4
[»] chr3 (2 HSPs)
chr3 (7-847)||(48670824-48671672)
chr3 (906-996)||(48671734-48671824)


Alignment Details
Target: chr3 (Bit Score: 606; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 606; E-Value: 0
Query Start/End: Original strand, 7 - 847
Target Start/End: Original strand, 48670824 - 48671672
Alignment:
Q  7 atttaattggtatcaaggaaaagaaagatcaatgcttattccaaattgtttctttcgtatgggttgttctgctgttttgctctctaaccgtcgtcgggat 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  48670824 atttaattggtatcaaggaaaagaaagatcaatgcttattccaaattgtttctttcgtatgggttgttctgctgttttgctctctaaccgtcgtcgtgat 48670923  T
Q  107 tttggccgcgcgaaatatcgtcttgaacacattgttcgtacacataaaggtgctgatgatcgcagtttcaggtacttcaaacatccaatcatatcttact 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48670924 tttggccgcgcgaaatatcgtcttgaacacattgttcgtacacataaaggtgctgatgatcgcagtttcaggtacttcaaacatccaatcatatcttact 48671023  T
Q  207 atttcaatatttgtgttgatattttaaaaaacaatgttataacacatcgaattgataatatttgatcagattcagatgtatgtgtaagnnnnnnnaaacc 306  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||       |||||    
T  48671024 atttcgatatttgtgttgatattttaaaaaacaatgttataacacatctaattgataatatttgatcagattcagatgtatgtgtaagtttttttaaacc 48671123  T
Q  307 atcgacaaattgagattaaacggatcataatttcgatttaatggattacttgttactaannnnnnnnnnnnnggtgatacttgttactaatttcttcact 406  Q
    || ||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||||    
T  48671124 attgacaaatagagattaagcggagcataatttcgatttaatggattacttgttactaatttttttttttttggtgatacttgttactaatttcttcact 48671223  T
Q  407 tatcaattaagcatgaaattaattttgagtatcagtaataataaattcatggtttcccttttacgggggtatcgatag-nnnnnnnnaagggatgaggat 505  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||         |||||||||||||    
T  48671224 tatcaattaagcatgaaattaattttgagtatcagtaataagaaattcatggtttcccttttacgagggtatcgatagtttttttttaagggatgaggat 48671323  T
Q  506 atcgatagttattattacagatagattggtccatcatggactaaattttgttttgtaccatgctatg-tgnnnnnnnnnnnnnnatataacttgtaccat 604  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |               ||||||||||||||||    
T  48671324 atcgatagttattattacagatacattggtccatcatggactaaattttgttttgtaccatgctatgtttttttttttttttatatataacttgtaccat 48671423  T
Q  605 gctatgttttatttcctcatattttgatcactattctgtattttatgccaaaagaataaaaacagtctcaaccaatcatccctaatagaaaagtgagatg 704  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  48671424 gctatgttttatttcctcatattttgatcactattctgtattttatgccaaaagaataaaaacagtctcaatcaatcatccctaatagaaaagtgagatg 48671523  T
Q  705 gaaaaataatcaaaataaccactaatgga-----nnnnnnnataatgactactaatagatatgacatgtattgtgtgttattaaaaaagaaagagatt-a 798  Q
    |||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |    
T  48671524 gaaaaataatcaaaataaccactaatggattttttttttttataatgactactaatagatatgacatgtaatgtgtgttattaaaaaagaaagagattaa 48671623  T
Q  799 aagaggaatgactgaataaggacgtaaaaaataatatgaaagagaagtg 847  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  48671624 aagaggaatgactgaataaggacgtaaaaaataatatgaaagagaagtg 48671672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 906 - 996
Target Start/End: Original strand, 48671734 - 48671824
Alignment:
Q  906 gatattgacaaatgacctaactttcacct-ggccttgtgaat-aacactaacaaaaagtatgcgcttttggatatgtgggtttcgatattttc 996  Q
    |||| |||||||||||||||||||||| | |||||||||||| ||||||||||||||||||  |||||||||||||||| |  ||||||||||    
T  48671734 gataatgacaaatgacctaactttcacgtgggccttgtgaataaacactaacaaaaagtat--gcttttggatatgtggttaccgatattttc 48671824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University