View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4639-Insertion-5 (Length: 903)
Name: NF4639-Insertion-5
Description: NF4639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4639-Insertion-5 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 362; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 422 - 903
Target Start/End: Original strand, 5558140 - 5558603
Alignment:
| Q |
422 |
atacttgacttaggatttcatgtcaatttcgaggcttttgcttaatgtgctttttaattgcatcaatcaagatcttgtcaacgacttgtccattaacttg |
521 |
Q |
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| T |
5558140 |
atacttgacttaggatttcatgtcaatttggaggcttttgcttaatgtgctttttaattgcatcaatcaagatcttgtcaacgacttgtccattagcttg |
5558239 |
T |
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| Q |
522 |
agcattgaaagacgttgatgttgataacttgacatcttaatgtgttttctagcctctaatctcatggtattttgggctaattcaagttgtgttcaagttt |
621 |
Q |
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| T |
5558240 |
agcattgaaagacgttgatgttgataacttgacatcttaatgtgttttctagcctctaatctcatggt-------------------tgtgttcaagttt |
5558320 |
T |
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| Q |
622 |
agaaacagtttctagcctccaatctcatggttctaatgcattagtgttcaagtttcgaaaaatgcattataaaattgctctttgaccttcaataatcttt |
721 |
Q |
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| T |
5558321 |
agaaacagtttctagcctccaatctcatggttctaatgcattagtgttcaagtttcgaaaaatgcattataaaattgctctttgaccttcaataatctt- |
5558419 |
T |
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| Q |
722 |
atgaaagtgttttcttatgattttatatccataagtattttgggctaattcatttgcttgaatgttttcttgtcaaggtatatattccaaaactaccaca |
821 |
Q |
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| T |
5558420 |
atgaaagtgttttcttatgattttatatccgttagtattttgggctaattcgtttgcttgaatgttttcttgtcaaggtatatattccaaaactaccaca |
5558519 |
T |
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| Q |
822 |
tcaaactttggaattaatctattagctatttc-aaatatctatagagattaa-actttcacacttggtaataagttttaattga |
903 |
Q |
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| T |
5558520 |
tcaaactttgaaattaatctattagctatttcaaaatatctatagagattaagactttcacacttgtaattaagttttaattga |
5558603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 11 - 364
Target Start/End: Original strand, 5557793 - 5558142
Alignment:
| Q |
11 |
atatgatcaaagttgaggcaggtatggaaagacattcgaactcttctagacttgctataatagttcttcctgggttgatttgtcannnnnnnnnn----- |
105 |
Q |
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| T |
5557793 |
atatgatcaaagttgaggcaggtatgaaaaaacattcaaactcttctagacttgctataatagttcttcctgggttgatttgtcatttttttttattttt |
5557892 |
T |
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| Q |
106 |
-aaatgtaacttgaacaagtgttttgtcattaaactttttaatactttttaatattgatctaagttactttatattcatgaataactagtttatagtact |
204 |
Q |
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| T |
5557893 |
aaattgtaacttgaacaagtgttttgtcatta----------tactttttaatattgatctaagttactttatattcatgaataactagtttatagtact |
5557982 |
T |
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| Q |
205 |
tcaaatattgtttaaagccaccaacttttcttcttttagactttgtaaatggttatgtatcatttttaatgtaattttgtactaataagccattttgttg |
304 |
Q |
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| T |
5557983 |
tcaaatattgtttaaagccactaactcttcttcttttagactttgtaaattgttatgcatcatttttaatgtaattttgtactagcaagccattttgttg |
5558082 |
T |
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| Q |
305 |
ctgcaactttaaatttaatactaaattcaattcaataggcaacacaatatcttaaccata |
364 |
Q |
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| T |
5558083 |
ctgcaactttaaatttaatactaaattcaattcaataggcaacacaacatcttaaccata |
5558142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 710 - 778
Target Start/End: Original strand, 32773499 - 32773566
Alignment:
| Q |
710 |
tcaataatctttatgaaagtgttttcttatgattttatatccataagtattttgggctaattcatttgc |
778 |
Q |
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| T |
32773499 |
tcaataatctt-atcaaaatgtttgcttaggattttatatccaaaagtattttgggatagttcatttgc |
32773566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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