View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4639-Insertion-6 (Length: 782)
Name: NF4639-Insertion-6
Description: NF4639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4639-Insertion-6 |
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Alignment Details
Target: chr7 (Bit Score: 512; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 155 - 732
Target Start/End: Original strand, 42210425 - 42211012
Alignment:
| Q |
155 |
taatacgtcaccttttcctataaactaagttacgatctcttgatcaagaaatcaatgattgatattatatgcacctaacaaataataattgattgatgcg |
254 |
Q |
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| T |
42210425 |
taatgcgtcaccttttactataaactaagttacgatctcttgatcaagaaatcaatgattgatattatatacacctaacaaataataattgattgatgcc |
42210524 |
T |
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| Q |
255 |
ttcaaatatgactgctagtttttccgctttaacatgtattcactttaaaggagtcaaattagttactt-----gtcgattgtgtgttgcattttctttta |
349 |
Q |
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| T |
42210525 |
ttcaaatatgactactagtttttccgctttaacatgtattcactttaaaggagtcaaattagttacttaacttgtcgattgtgtgttgcattttctttta |
42210624 |
T |
|
| Q |
350 |
tccttatttggagacagaatagaaaaagaaaaccgacgttctgtgtgctgtctctattttcttgacaatttaatttattgtatacacattaatttttggg |
449 |
Q |
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| T |
42210625 |
tccttatttggagacagaatagaaaaagaaaaccgacgttctgtgtgctgtctctattttcttgacaatttaatttattgtatacacattaatttttagg |
42210724 |
T |
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| Q |
450 |
tgtgcgtcttttatccttattgtattgctaatgctagtagtaataccaatatatgaacacaacaaactaaaaacatg-----tatttgatagtagtgttg |
544 |
Q |
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| T |
42210725 |
tgtgcgtcttttatccttattgtattgctaatgctagtagtaataccaatatacgaacacaacaaactaaaaacatgtctaatatttgatagtagtgttg |
42210824 |
T |
|
| Q |
545 |
tcaaatagcagctatagttagcggaatttgaacaaatcatcgttgttatgtgatgcatgatatatagtacaaagtcacaaagtgttgttaaatagaagcg |
644 |
Q |
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| T |
42210825 |
tcaaatagcagctatagttagcggaatttgaacaaatcatcgttgttatgtgatgcatgatatatagtacgaagtcacaaagtgttgttaaatagaagcg |
42210924 |
T |
|
| Q |
645 |
ctttaacgcataacgtagcctaatttaaacaaactactatttgccacaatatgcgattgacaacactaatatttgtttattgaattga |
732 |
Q |
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| T |
42210925 |
ctttaacgcataacgtagcctaatttaaacaaactactatttgccacaatatgcgattgacaacactaatacttgtttattgaattga |
42211012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 7 - 169
Target Start/End: Original strand, 42210074 - 42210247
Alignment:
| Q |
7 |
aaaatcatggttaattaatttgatgatcaatgtgttttaacaacttatattcattaaacacaatcacacacatatttaagttgtg-----------ttgt |
95 |
Q |
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| T |
42210074 |
aaaatcatggttaattaatttgatgatcaatgtgttttaacaacttatattcattaaacacaatcacacacatatttaagttgtgtatcatcagtattgt |
42210173 |
T |
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| Q |
96 |
ttttgaaattttattttcaagagatgattatctattttcacctttctctataaactaactaatacgtcaccttt |
169 |
Q |
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| T |
42210174 |
ttttgaaattttattttcaagagatgattatctattttcacctttctcaataaactaactaatacgtcaccttt |
42210247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 666 - 708
Target Start/End: Complemental strand, 40213853 - 40213811
Alignment:
| Q |
666 |
aatttaaacaaactactatttgccacaatatgcgattgacaac |
708 |
Q |
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| T |
40213853 |
aatttaaacaaaccactattttccacaatatgcgattgacaac |
40213811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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