View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4639-Insertion-7 (Length: 672)
Name: NF4639-Insertion-7
Description: NF4639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4639-Insertion-7 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 8 - 672
Target Start/End: Original strand, 36863773 - 36864419
Alignment:
| Q |
8 |
ttgttatgtgttttccttcagttagcagatgtatggtcgtgtggagtgatactttacataatgctagtgggagaatttccatttggggaccaaaaggatc |
107 |
Q |
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| T |
36863773 |
ttgttatgtgttttccttcagttagcagatgtatggtcgtgtggagtgatactttaaataatgctagtgggagaatttccatttggggaccaaaaggatc |
36863872 |
T |
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| Q |
108 |
tgcaaaatctcaagaaaatcatgaatgtacttaattttccttcnnnnnnnnnnccaaccctagtaaatagatttatcacatgactattcttactagtgat |
207 |
Q |
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| T |
36863873 |
tgcacaatctcaagaaaatcatgaatgtacttaattttccttcttttttt---ccaaccctagtaaatagatttatcacatgactattcttactggtgat |
36863969 |
T |
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| Q |
208 |
gcaacnnnnnnngcagaaaattatgcttgttcaatacaagatcccaaacaccgttcacatgtctcaagattgtagcaatctaatatctcgcatttttgtt |
307 |
Q |
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| T |
36863970 |
gcaactttttttgcagaaaattatgcttgttcaatacaagatcccaaacaccgttcacatgtctcaagattgtagcaatctaatgtctcgcatttttgtt |
36864069 |
T |
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| Q |
308 |
gcaaatccaatgagagtatgtatatgttttgttgctgagtaacatagatatatatcttgcattctcgcagtcaacacaatacctttatatcgaaatcaga |
407 |
Q |
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| T |
36864070 |
gcaaatccaatgagagtatgtatatgttttgttgctgagtaacatagatat----cttgcattctcgcagtcagcacaatacctttatatcgaaatcaga |
36864165 |
T |
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| Q |
408 |
cactaaaaaatacatgtataatttgtatttttagcatccaaaatatcaagtttggcatctagatagatctaatgatcatcgatatgatgacttataactg |
507 |
Q |
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| T |
36864166 |
cactaaaaaatacatgtataatttgtatttttagcatccaaaatatcaagtttgacatctagatagatctaatgatcatcgatatgatgacttatgactg |
36864265 |
T |
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| Q |
508 |
cgtgaaagcagaaaacacatatcataacatctcctatttcttttatttactttaattagttgttgcaagtaatatgtcttaaactatataataatttcat |
607 |
Q |
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| T |
36864266 |
cgtgaaagcagaaaacacatatcataacatctcctatttcttttattt-----------ttgttgcaagtaatatgtcttaaactatataataatttcat |
36864354 |
T |
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| Q |
608 |
tgtagagaatcaccatgagagaaattaagtcccacccgtggtttttagtgaacttgcctaaggaa |
672 |
Q |
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| T |
36864355 |
tgtagagaatcaccatgagagaaattaagtcccacccgtggtttttagtgaacttgcctaaggaa |
36864419 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 544538 - 544614
Alignment:
| Q |
24 |
ttcagttagcagatgtatggtcgtgtggagtgatactttacataatgctagtgggagaatttccatttggggaccaa |
100 |
Q |
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| T |
544538 |
ttcagttggcagatgtatggtcttgtggagtgactctttatgtaatgctggtgggagcatacccatttgaggaccaa |
544614 |
T |
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